GgaEX7010014 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6330255-6336534:+
Coord C1 exon
chr19:6330255-6330352
Coord A exon
chr19:6330461-6330592
Coord C2 exon
chr19:6336475-6336534
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTCTCCTCTCCCCAGGAG
3' ss Score
11.35
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACCTGTACTGCACACTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAGACCAGGGTTTTTCGGGACACGACAGAGCCGCAGTGGAATGAG
Seq A exon
GAGTTTGAGATTGAGCTGGAAGGTTCCCAGTCCCTGCGCATCCTCTGCTATGAGAAGTGCTATGACAAGACCAAGCTCAACAAGGACAACAATGAAATTGTGGACAAGATCATGGGCAAGGGGCAGATCCAG
Seq C2 exon
CTGGACCCACAGGCTGTGCAGACCAAGAACTGGCACATGGACGTGATTGAGATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.0=100)
A:
PF0016825=C2=PD(44.9=90.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTACTGCACACTGGAGGT
R:
CCCATTCATCTCAATCACGTCCA
Band lengths:
157-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]