RnoEX6048624 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64573646-64600710:-
Coord C1 exon
chr10:64600613-64600710
Coord A exon
chr10:64600135-64600266
Coord C2 exon
chr10:64573646-64573705
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCATCTCTCGCCAGGAG
3' ss Score
10.25
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCTTTACTGTACTCTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAAACCAGGGTGTTTCGGGACACGACAGAGCCCAAGTGGGATGAG
Seq A exon
GAGTTTGAGATTGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAATGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATTGTGGACAAGATCATGGGCAAGGGGCAGATCCAG
Seq C2 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGATGTGATTGAAATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'39-35,'39-27,40-35=AN
Average complexity
A_S
Mappability confidence:
93%=100=90%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.0=100)
A:
PF0016825=C2=PD(44.9=90.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTACTGTACTCTGGAGGTGGA
R:
CCCATTCATTTCAATCACATCCGT
Band lengths:
157-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]