HsaEX0000749 @ hg19
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:913969-915225:-
Coord C1 exon
chr17:915086-915225
Coord A exon
chr17:914845-914901
Coord C2 exon
chr17:913969-914103
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTCCCTTGCTGCAGGTA
3' ss Score
10.77
5' ss Seq
CTTGTAGGT
5' ss Score
2.94
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAGTGTGTGGAGGAGGTGGAGAAGAGGGGTATCGAGGAGGTTGGCATCTACAGGATATCGGGCGTGGCCACGGACATCCAGGCGCTCAAGGCCGTCTTCGATGCCA
Seq A exon
GTAAGCAACTGCAGAAACTCACAAGGGCCGACTCACTTGCCCAGGATGACCCAACTT
Seq C2 exon
ATAACAAGGACATCCTGCTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGGACGCTCAAGCTGTACTTCCGGGAACTGCCCGAGCCGCTCCTCACGGACCGACTCTACCCAGCCTTCATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[94=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.009
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
PF0062022=RhoGAP=FE(11.0=100)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTGGAGAAGAGGGGTA
R:
GGCGTTGATGTCCATGTCACT
Band lengths:
143-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)