HsaINT0001900 @ hg19
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:913969-915225:-
Coord C1 exon
chr17:915086-915225
Coord A exon
chr17:914104-915085
Coord C2 exon
chr17:913969-914103
Length
982 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CCTCGGCCCCACCCCTGCAGATA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAGTGTGTGGAGGAGGTGGAGAAGAGGGGTATCGAGGAGGTTGGCATCTACAGGATATCGGGCGTGGCCACGGACATCCAGGCGCTCAAGGCCGTCTTCGATGCCA
Seq A exon
GTGAGTCTGGGAGGCCCAGCCGGGGCAGGTGTGGCTGTGTCTGAGCAGGCTGGTGGGATGGACAGGAGAGCTCGGGGGAACCAGGAGCCTCCCTGGAGAGGAGGCTTGCTCTGCTTCAGAGTCCCCGTGGCAAGTGCTTTCTCTTGTAATCCCCTCCCCTCCAATCTCTTGTCCCTTGCTGCAGGTAAGCAACTGCAGAAACTCACAAGGGCCGACTCACTTGCCCAGGATGACCCAACTTGTAGGTTTTGGTTCTGGACTTAAAACTCAGATCTGACTCCAGTGTCTTTCTTGCTAGTTCCTGGGTGCCTGGTGAGCCGCAGGGAAAGAGCTTTGAGCCTGCACCTGCTGTCTCCAGGGCCCCAGGTCCCCTCTGGGGCAGTGCTGCCTCTGCGTGAAGCCCACCATGGTGAGGCCTGACCTTTCTGGTTTCTCCTCCCTGCTCCTGCTGGTTCAGGTGCAGCAGCCACATACCCCACTGTCAAGAAACCTGCACTGGCCAGGCAGGGATGAATCCGTGGGGAGCCTGGAGTGGAGGACGGGGTGGGGCCTGGGAACTGGCCGGCGTTGGTGCCTCTGTGCAGCCTAGAAGCTGAGGCTTTGTCGGAACATGCTTTTACGTGTGAAAAGTGTGCAATGCCTTCCAGAGAGGGGCTTAGCGATGGAGAGGTTCCAGTCGGAAGGAAGCTGCAGGCCACATGGTATGAATGTGGCTCTGAACTCTGGGTGATGGATTTCACTCCCCAAACACCCTTTCCCAAGCAGCCACAGCAGATGGCCCCCAGGCTATCTCTCCCTGTTCCCCCAACCCCGACCCACAGAGCCGAGTCACAGACACCTGTGGGCCCTCTCTACATCCTGCTCTTCCAGGGGAGACCAGAACCAGAGCTGGAGTGGGTGGGGGCTGTGTCAGGATGGGTCGGGGGTGGAACGGGGCTGCTGGCCCAGCTAAGGCTGCCTGACCTCGGCCCCACCCCTGCAG
Seq C2 exon
ATAACAAGGACATCCTGCTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGGACGCTCAAGCTGTACTTCCGGGAACTGCCCGAGCCGCTCCTCACGGACCGACTCTACCCAGCCTTCATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-ABR:NM_001092:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGTGCCCTACATCGTC
R:
GATGCCCTCCATGAAGGCTG
Band lengths:
264-1246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)