MmuINT0009174 @ mm10
Intron Retention
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76423048-76424173:-
Coord C1 exon
chr11:76424034-76424173
Coord A exon
chr11:76423183-76424033
Coord C2 exon
chr11:76423048-76423182
Length
851 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CCTTGCCCCCTCCTGTACAGATA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAATGCATAGAAGAGGTGGAGAAGAGGGGCATTGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
Seq A exon
GTGAGTAGAGAGGCCCAGCGGGTATGGGTGGTACCTGAGCAGCTGGTGGAGAGGGAGAAGCCTTGGCCAGTGCCCTGTAATTTGTTGTGGCACGAAGGAGGCTGTTTCTGAGTCCCCTGACAAGTTACATGTCCTGGGTCTTGTCACTTAGGTCTCCCTCATGTTTCTTAACCACTGCTACAATGAGGATGGCATTCAGAGAGGTCAGGTCACTCGTTCTGGGTTACCCAACTTGCACGTTTCTGTTCCTGAACTTAAATTGAGACCTTTTGACTCCATAGTATACATTGCTGGCTCAGACTTCTTCCTCCCTGCTGTCTTCGGGCCCTGTTACCATGTGGCAGGTCTCTTCTGTGGCGGGTCCTGGCCCTCAGTTTCCCCTCTTCTATCAGGCTGGGTCGGGCTAAGGCACTGGTATTATATCCAGCGTTCAGGATGCTTGAGCTAGGCAGGCAGCCATGATGAGTCCACGTAGGGTGAGGGTAGGCTAGGGGCTGGGAACATGATGATATATGGCTCCCTAGACCACGTAATTAGGTGTGTGCTATGTGGGGTGGGTATCACTCTGGTACTCTGAGCAACTCATTATGTCCCTCCTTTCTTCTGAGAAGTCACAGCAGATAGACTCTAACCTGTCCCTTGATGCCCTTGCCCACAGATAGCATCTGCATTGACATATGGTAGAGCTTGTGGGCACCATGTATACCCTACCTTCCTAAGGGGAGGCAGTAAAGGAGTGCAGTGCGTAGAGGTTCGAGGGACAGATATGAGGGACGGAAACAGTACTTAGGGCTGCCCCTGAGATGTCTCGGAGGTGAGTGTAGCCTCTGACCTTGCCCCCTCCTGTACAG
Seq C2 exon
ATAACAAGGACATCCTACTGATGCTGAGCGACATGGACATCAACGCCATCGCTGGGACCCTCAAGCTATACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGATAGACTTTATCCAGCCTTCATGGAGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631:ENSMUST00000072740:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGTGCCCTACATCGTC
R:
CAATGCCCTCCATGAAGGCTG
Band lengths:
265-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types