HsaINT0001900 @ hg38
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1010729-1011985:-
Coord C1 exon
chr17:1011846-1011985
Coord A exon
chr17:1010864-1011845
Coord C2 exon
chr17:1010729-1010863
Length
982 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CCTCGGCCCCACCCCTGCAGATA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAGTGTGTGGAGGAGGTGGAGAAGAGGGGTATCGAGGAGGTTGGCATCTACAGGATATCGGGCGTGGCCACGGACATCCAGGCGCTCAAGGCCGTCTTCGATGCCA
Seq A exon
GTGAGTCTGGGAGGCCCAGCCGGGGCAGGTGTGGCTGTGTCTGAGCAGGCTGGTGGGATGGACAGGAGAGCTCGGGGGAACCAGGAGCCTCCCTGGAGAGGAGGCTTGCTCTGCTTCAGAGTCCCCGTGGCAAGTGCTTTCTCTTGTAATCCCCTCCCCTCCAATCTCTTGTCCCTTGCTGCAGGTAAGCAACTGCAGAAACTCACAAGGGCCGACTCACTTGCCCAGGATGACCCAACTTGTAGGTTTTGGTTCTGGACTTAAAACTCAGATCTGACTCCAGTGTCTTTCTTGCTAGTTCCTGGGTGCCTGGTGAGCCGCAGGGAAAGAGCTTTGAGCCTGCACCTGCTGTCTCCAGGGCCCCAGGTCCCCTCTGGGGCAGTGCTGCCTCTGCGTGAAGCCCACCATGGTGAGGCCTGACCTTTCTGGTTTCTCCTCCCTGCTCCTGCTGGTTCAGGTGCAGCAGCCACATACCCCACTGTCAAGAAACCTGCACTGGCCAGGCAGGGATGAATCCGTGGGGAGCCTGGAGTGGAGGACGGGGTGGGGCCTGGGAACTGGCCGGCGTTGGTGCCTCTGTGCAGCCTAGAAGCTGAGGCTTTGTCGGAACATGCTTTTACGTGTGAAAAGTGTGCAATGCCTTCCAGAGAGGGGCTTAGCGATGGAGAGGTTCCAGTCGGAAGGAAGCTGCAGGCCACATGGTATGAATGTGGCTCTGAACTCTGGGTGATGGATTTCACTCCCCAAACACCCTTTCCCAAGCAGCCACAGCAGATGGCCCCCAGGCTATCTCTCCCTGTTCCCCCAACCCCGACCCACAGAGCCGAGTCACAGACACCTGTGGGCCCTCTCTACATCCTGCTCTTCCAGGGGAGACCAGAACCAGAGCTGGAGTGGGTGGGGGCTGTGTCAGGATGGGTCGGGGGTGGAACGGGGCTGCTGGCCCAGCTAAGGCTGCCTGACCTCGGCCCCACCCCTGCAG
Seq C2 exon
ATAACAAGGACATCCTGCTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGGACGCTCAAGCTGTACTTCCGGGAACTGCCCGAGCCGCTCCTCACGGACCGACTCTACCCAGCCTTCATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842:ENST00000302538:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGTGCCCTACATCGTC
R:
GATGCCCTCCATGAAGGCTG
Band lengths:
264-1246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development