GgaINT1005257 @ galGal4
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6336870-6337690:+
Coord C1 exon
chr19:6336870-6337009
Coord A exon
chr19:6337010-6337555
Coord C2 exon
chr19:6337556-6337690
Length
546 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
TGGCTCTGCTCTCTGGCCAGATA
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCGTGAGCGCTCCAAGGTGCCTTACATTGTGCGCCAGTGCATCGAGGAGGTGGAGAAGAGAGGCATTGAGGAGGTCGGCATCTACAGGATCTCTGGCGTCGCCACAGACATCCAGGCATTGAAGGCTGTCTTTGATGCGA
Seq A exon
GTGAGTGACTGCCACTGTCCATCTCCAGCCATCAGGCACCCTTCCAGCCCACAGTCCTGCAGGCTCGGGGTCTGCCTGTTGCATTGCATGAGGTGCAAATCGTGTGGGTGGGTGCATGGGGTCTGAGCCCCCAGAAGGGAGCCCTGCAGCCCCTGACCTATTTTTGGTGGTGTTTGTGTTATGGTTGTGCTCTGCCTCCATGCCTGGCCGGCTCCCAGGGAGACACTGAGTCAGGACAAGGTTGCAGATGGATTTGCAAATTGTTCCGCGTTCCATTGCCCAGCAGGCGTGGACCGCTCAGCTGTGCCCAGCCCCGGCATGGCCAAACAATCCACTCCCAACAGCAGCAGGAGGGTCAGCAGTTGGATTAATGCTCACGCTGGTGCACATCCCCTCCGTGGGGTGGTCACATCCATAGGGACCCACGCTGTCTCTCGGGGTGCCATGGGGATGGGCACCCAGCTGTGCTGCCCTCTCCTTGGGCATTGGGGAGATACCGGTGTTGGCAAACAGGAAGCGCCACACGTGGCTCTGCTCTCTGGCCAG
Seq C2 exon
ATAACAAGGACATCCTGGTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGCACGCTCAAGCTGTATTTCCGGGAGCTGCCTGAGCCCCTCCTCACTGACAGACTGTACCCTGCCTTTATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCTCCAAGGTGCCTTA
R:
CGATGCCCTCCATAAAGGCAG
Band lengths:
271-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]