RnoINT0011425 @ rn6
Intron Retention
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64571470-64572532:-
Coord C1 exon
chr10:64572393-64572532
Coord A exon
chr10:64571605-64572392
Coord C2 exon
chr10:64571470-64571604
Length
788 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CCTTGCCCCCTCCTGTACAGATA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATAGTCCGGCAGTGCATAGAAGAGGTGGAGAAGAGGGGCATCGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
Seq A exon
GTGAGTAGTGAGACCCAATGGGTATGGGTGGTACCCAAGCAGCTGGTGGAAAGCAGAGAGGCTTTGACCTATGCCCTGTAGTTTGCTGTGGCACGAAGGATCCTGTCTCTGAGTCCCCTGACAAGGTTACATGTTCTGGGTCTTGTCATTTAAGTCTCCCTCAGTCAAGTTTCTTAACCACTGCTACAATAAGGATGGCGTTCAGAGAGGTTGGGTCACTTGTTCTGGGTTACCCAGCTTGTATGTCTTTGTACCTGAACTTAAATTGAGACCTTTTGGCTTAGGCCCTGTTGCATGTGGCAGGTCTCTTCTGAGGTGGGTCGTGGCCTTGAGTTTCCTCTTTTCCTGGGCTGGGCCAGGCTAAGGCACTGGTAGTTTATCTAGTGCTCAGGATGCCTGAACAAGGCAAGCAGCCATGAGTCCAGATAGGTAAGGATAGGCTAGGATCTGAGAGCATGATGGTATATGGCTCTCTAGAAAATGTGATTAGGTGTGTGCTGTGTGGTGTAGATATAGCTCTGGTACTCTGAGCGACTAGTCATGTCCTTCCTCTCTTCTGAGAAGTCATAGCAGATAGACCCCAGCCTGTCCCTTGCTGCCCTTTCCCACAGATAACAGCCACATTGATATACCGAAGAGCTTGTGGGCACCATCTATGCCCTACCATCCTAGGGGGAGGCAAAGGAGTGAAGTGGGAAGAGGTTTAAGGGACAGATCTAAGGATCTGAACTGCCACTAAGATGTCTTGGAGGTCAGTGTAGCCTCTGACCTTGCCCCCTCCTGTACAG
Seq C2 exon
ATAACAAGGATATCCTACTGATGCTGAGTGACATGGACATCAACGCTATTGCTGGTACCCTCAAGCTCTACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGACCGACTCTACCCAGCCTTCATGGAGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837:ENSRNOT00000080703:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGCCCTACATAGTCCGG
R:
CAATGCCCTCCATGAAGGCTG
Band lengths:
262-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]