HsaEX0000866 @ hg19
Exon Skipping
Gene
ENSG00000171903 | AC005336.2
Description
cytochrome P450, family 4, subfamily F, polypeptide 11 [Source:HGNC Symbol;Acc:13265]
Coordinates
chr19:16034622-16038149:-
Coord C1 exon
chr19:16038022-16038149
Coord A exon
chr19:16035571-16035692
Coord C2 exon
chr19:16034622-16034892
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTTCTCTGGCCAGGAC
3' ss Score
9.57
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGCTGAGTGGTGGTGACAAGTGGAGCCGCCACCGTCGGATGTTGACGCCTGCCTTCCATTTCAACATCTTGAAGCCTTATATGAAGATTTTCAACAAGAGTGTGAACATCATGCAC
Seq A exon
GACAAGTGGCAGCGCCTGGCCTCAGAGGGCAGCGCCAGACTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGTCTGCAGAAATGTGTCTTCAGCTTTGAAAGCAATTGTCAGGA
Seq C2 exon
GAAGCCCAGTGAATATATTGCCGCCATCTTGGAGCTCAGTGCCTTTGTAGAAAAGAGAAACCAGCAGATTCTCTTGCACACGGACTTCCTGTATTATCTCACTCCTGATGGGCAGCGCTTCCGCAGGGCCTGCCACCTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCTGCACCCTCCCCACTCAGGGTATTGATGATTTCCTCAAGAACAAGGCAAAGTCCAAGACTTTAGACTTCATTGATGTGCTTCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171903_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.3=100)
A:
PF0006717=p450=FE(10.8=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTGACGCCTGCCTTCC
R:
ATGACGGCATCTGTGAAGTCG
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)