RnoEX0026014 @ rn6
Exon Skipping
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14871502-14874856:+
Coord C1 exon
chr7:14871502-14871629
Coord A exon
chr7:14873394-14873515
Coord C2 exon
chr7:14874586-14874856
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCTCTCCAACAAAGGCC
3' ss Score
5.64
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGGATGGGCTCTTGGTGAGTGCCAGTGACAAGTGGAGCCGCCACCGTAGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATCATGCAT
Seq A exon
GCCAAGTGGCTGCGCCTGGCCTCAGGGGGTAGCGCCCATCTGGACATGTTTGAGAACATCAGCCTCATGACCTTGGATACTTTGCAGAAATGTGTCTTCAGCTTCAACAGCAACTGTCAGGA
Seq C2 exon
GAAGCCCAGTGAGTACATTGCCGCCATCTTAGAACTCAGTGCACTGGTCGTGAAAAGAAACGAACAGCTGCTTCTGCACATGGACCTGCTCTACCGCCTCACACCTGATGGAAGGCGCTTCTACAAGGCCTGCCACCTGGTGCATGACTTCACCTATGCCGTCATCCAGGAGCGACGTCGCACTCTGCCCAAGCATGGTGGTGATGATGTCATCAAGGCCAAAGCCAAGTCCAAGACTCTGGACTTCATTGATGTACTGCTACTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.1=100)
A:
PF0006717=p450=FE(8.6=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGTGAGTGCCAGTGAC
R:
GTAGAAGCGCCTTCCATCAGG
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]