HsaEX6093627 @ hg38
Exon Skipping
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15619490-15623375:+
Coord C1 exon
chr19:15619490-15619762
Coord A exon
chr19:15622219-15622340
Coord C2 exon
chr19:15623105-15623375
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGCTCCCTTCTCTGGCCAGGCC
3' ss Score
9.71
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
ATGCCATTACAGACAAGGACATAGTCTTCTACAAGACCCTGAAGCCCTGGCTGGGTAAGTAACTGTAGGTGGACGGGACGGGGACCAACTTTTGTGGCCAGGGGAAGATTCTGCCCTTGCCCACAGCCTTTGGCTGCCGTACTAGGGGATGGGCTCTTGTTAAGTGTTGGTGACAAGTGGAGACACCACCGTCGCTTGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATAAAGATTTTCAGCAAGAGTGCAAACATCATGCAT
Seq A exon
GCCAAGTGGCAACGCCTGGCCATGGAGGGCAGCACCTGTCTGGATGTGTTTGAGCACATCAGCCTTATGACCCTGGACAGTCTGCAGAAATGCATCTTCAGCTTTGACAGCAATTGTCAGGA
Seq C2 exon
GAAGCCCAGTGAATATATTACTGCGATCATGGAGCTCAGTGCCCTTGTAGTGAAACGGAATAACCAGTTCTTCCGGTACAAGGACTTCCTGTACTTCCTCACTCCCTGTGGACGGCGCTTCCACAGGGCCTGCAGACTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACCCTCACTAGCCAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAGTCCAAGACTTTGGACTTTATTGATGTGCTCCTGCTGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(8.6=100)
C2:
PF0006717=p450=FE(19.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTTGTGGCCAGGGGAAG
R:
CCGTTTCACTACAAGGGCACT
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains