MmuEX1007962 @ mm10
Exon Skipping
Gene
ENSMUSG00000048440 | Cyp4f16
Description
cytochrome P450, family 4, subfamily f, polypeptide 16 [Source:MGI Symbol;Acc:MGI:1917351]
Coordinates
chr17:32542877-32545153:+
Coord C1 exon
chr17:32542877-32543004
Coord A exon
chr17:32544108-32544229
Coord C2 exon
chr17:32544883-32545153
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTTCTCTGTTCAGGCC
3' ss Score
11.78
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GGGATGGGCTCTTCCTGAGTTCAGGTGACAAGTGGAGCCGCCATCGTCGACTGCTGACACCTGCCTTCCACTTTGATATCCTGAAGCCCTATGTGAAGATTTTTAACCAGAGTGTGAACATCATGCAC
Seq A exon
GCCAAGTGGAAGCACCTATCCTCGGAAGGCAGTGCACGTCTGGAAATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTGCAGAAATGCCTCTTTGGCTTTGACAGCAACTGTCAGGA
Seq C2 exon
GTCTCCCAGTGAATACATTTCTGCCATCTTGGAACTCAGTTCCCTCATAATAAAAAGGTCACTTCAGCTCTTCTTGTTCGTTGACTTCCTGTATTACCACACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGTGACCTGGTGCACAACTTCACAGATGCTGTCATTAGGGAGAGACGGCACACTCTCTCCAGCCAAAACCATGATGAGTTCTTGAAGTCCAAGACTAAGTCTAAGACTCTGGATTTCATTGATGTTCTCTTGTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048440_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.1=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCTGCCTTCCACTTTG
R:
AGTGTGCCGTCTCTCCCTAAT
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types