HsaEX0002241 @ hg19
Exon Skipping
Gene
ENSG00000186529 | AD000685.1
Description
cytochrome P450, family 4, subfamily F, polypeptide 3 [Source:HGNC Symbol;Acc:2646]
Coordinates
chr19:15758007-15760993:+
Coord C1 exon
chr19:15758007-15758134
Coord A exon
chr19:15759970-15760091
Coord C2 exon
chr19:15760723-15760993
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCTTCTCTGGCTAGGCC
3' ss Score
10.45
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGAAAAGTGGAGCCGCCACCGTCGGATGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATGAAGATTTTCAATGAGAGTGTGAACATCATGCAT
Seq A exon
GCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGCCCGTCTGGACATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTGCAGAAATGTGTCTTCAGCTTTGACAGCCATTGCCAGGA
Seq C2 exon
GAAGCCCAGTGAATATATTGCCGCCATCTTGGAGCTCAGTGCCCTTGTGACAAAAAGACACCAGCAGATCCTCCTGTACATAGACTTCCTGTATTATCTCACCCCTGATGGGCAGCGTTTCCGCAGGGCCTGCCGCCTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACCCTCCCTAGCCAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAATCCAAGACTTTGGACTTCATTGATGTACTCCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186529_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.1=100),PF056518=Diacid_rec=PU(35.8=55.8)
A:
PF0006717=p450=FE(8.6=100),PF056518=Diacid_rec=FE(59.7=100)
C2:
PF0006717=p450=FE(19.4=100),PF056518=Diacid_rec=PD(1.5=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGACGCCTGCCTTC
R:
ATGACGGCATCTGTGAAGTCG
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)