HsaEX0001206 @ hg19
Exon Skipping
Gene
ENSG00000249459 | AC026271.6
Description
zinc finger protein 286B [Source:HGNC Symbol;Acc:33241]
Coordinates
chr17:18584053-18585575:-
Coord C1 exon
chr17:18585517-18585575
Coord A exon
chr17:18584928-18585246
Coord C2 exon
chr17:18584053-18584142
Length
319 bp
Sequences
Splice sites
3' ss Seq
CCCAGCGTCACCTCTTCCAGGCG
3' ss Score
6.59
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATGCGCGACTCCGAGCTGGCCAAAGAAGTTCGTCCCCTTTGTGAGGCCCGGGATGGGAG
Seq A exon
GCGCCCGGTTCCCCCAGGGACAGCTTCAAGCGGTAGGGACAGACATCTGAGGACCCAGCCTCAGGGATGCTGTCCCCGGGCTTCCAGGCTCCAGCGCCGTAGGACTGAGGCAGACTCCACGGTGAGAAAGAGACCCGATCTAACCCAGGCCTTTCATCAGAGCCCAGGAGGGAAGGCAGGAAGTGGGACCACGAGGCCCGGGGGGCTTCTAACTCGTCTGGCCAGGGAGATCTGAATTGGGGTGAAGAGCAGAATCTCCAGAACAAGGAGGAGGTGGTGATCATGGAGACAGATTTGGCTGAAATGCCTGAGAAAGGAG
Seq C2 exon
TTCTGTCTTCCCAGGATTCTCCCCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTGCGCCTCACGGCCAGATCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249459_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0311810=RNA_pol_A_CTD=PU(72.4=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)