MmuEX0053197 @ mm9
Exon Skipping
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62601461-62602964:-
Coord C1 exon
chr11:62602878-62602964
Coord A exon
chr11:62602432-62602591
Coord C2 exon
chr11:62601461-62601546
Length
160 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTCCCTGGTTTCCAGGTC
3' ss Score
9.36
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
CCTGGATTTGCCCAGCAAAATGTCACGCATGCGCGACTCAGAGCTAAGCGGAGAAGTTCGTAGCCTTTGTCAGGCCTGGGATGGGAG
Seq A exon
GTCCCACGTGATCTGAGCGACACTCTCTACAGAGCCCAAGAGGGAAGAAGTCCTTCGAGGCTCCGTGGACTGCTGACTGCGCGAGAAGAGCAGGACCTTAGGGGCATGGAAGAGGTGGTGATCATGGAGACGGGTTTGGCCGAAGTGCCTCAGAAAAGAG
Seq C2 exon
CTCTGTCTTCCCCGGATTCTCTCCTTTCCCACGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACTGTCAGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.195 C2=0.621
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAAAATGTCACGCATG
R:
GACAGTGAGTCTCAGAGCAGC
Band lengths:
154-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: