HsaEX0073360 @ hg19
Exon Skipping
Gene
ENSG00000187607 | ZNF286
Description
zinc finger protein 286A [Source:HGNC Symbol;Acc:13501]
Coordinates
chr17:15602891-15604614:+
Coord C1 exon
chr17:15602891-15603091
Coord A exon
chr17:15603362-15603680
Coord C2 exon
chr17:15604466-15604614
Length
319 bp
Sequences
Splice sites
3' ss Seq
CCCAGCGTCACCTCTTCCAGGTG
3' ss Score
8.13
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTTCGATCGTCCGATTCTCCCAGCCGCACCACGGGTGCTCCCACCTGCGGAGAACCGGAGTCTGGCGATGCCAAGGCGCTTCTGGGAATTGTAGTTCCGGGCGGGATGAGGGCAGCACGCCTGGCTCCGCTCCTTCTTACGCATGCGCGACTCCGAGCTGGCCAAAGAAGTTCGTCCCCTTTGTGAGGCCCGGGATGGGAG
Seq A exon
GTGCCCGGTTCCCCCAGGGACAGCTTCAAGCGGTAGGGACAGACATCTGAGGACCCAGCCTCAGGGATGCTGTCCCCGGGCTTCCAGGCTCCAGCGCCGTAGGACTGAGGCAGACTCCACGGTGAGAAAGAGACCCGATCTAACCCAGGCCTTTCATCAGAGCCCAGGAGGGAAGGCAGGAAGTGGGACCACGAGGCCCGGGGGGCTTCTAACTCGTCTGGCCAGGGAGATCTGAATTGGGGTGAAGAGCAGAATCTCCAGAACAAGGAGGAGGTGGTGATCATGGAGACAGATTTGGCTGAAATGCCTGAGAAAGGAG
Seq C2 exon
CTCTGTCTTCCCAGGATTCTCCCCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTGCGCCTCACGGCCAGATCCCAGGTGAGTGAGTGCTGATTATTGGAATTACACCTTGTTTCTTAGAGTACAGATGCACTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187607-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.833
Domain overlap (PFAM):
C1:
PF153511=JCAD=PU(2.0=33.3)
A:
NO
C2:
PF0311810=RNA_pol_A_CTD=PU(75.0=80.0)
Other Inclusion Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGATCGTCCGATTCTCCCA
R:
TGCATCTGTACTCTAAGAAACAAGGT
Band lengths:
343-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)