HsaEX0001322 @ hg19
Exon Skipping
Gene
ENSG00000174501 | AC073995.2
Description
ankyrin repeat domain 36C [Source:HGNC Symbol;Acc:32946]
Coordinates
chr2:96479798-96519609:-
Coord C1 exon
chr2:96519457-96519609
Coord A exon
chr2:96502685-96502856
Coord C2 exon
chr2:96479798-96479893
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTTTCTTTCATCAGATA
3' ss Score
9.67
5' ss Seq
ACCGTATGT
5' ss Score
6.73
Exon sequences
Seq C1 exon
GTAGCTGTGAGACAGCTTCAACAAAAACAAGATGATGTCTTAAACAAACGATCAGCAACAAAAGCTTTGCTGGATGCTTCATCGCGTCACTGCATCTATTTAGAAAATGGGATGCAGGATTCAAGGAAGAAATTAGACCAGATGAGAAGTCAA
Seq A exon
ATATGGACATTTCTGGAATTACAGAGCCCCCTCTACATTGAGCACAAGACAGTGACGAATCCACATTCTTCAGCCAGAAAGTCACCTCTGAGAGCCAAATGTCTGATAATAGACAAGAGAGTCAGAGAATGATAACGACATCTCAGGAAAATTGTGAAAATAATCAGCAACC
Seq C2 exon
TTTCTCCACAGACACTACCCAAAGCAGTCCTTCACTACAGTGGCAGACAGACCTGAAAATTTTCATCTGAAGCAGCAGAGTGAACTGCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174501_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACAGCTTCAACAAAAACA
R:
CTGACTCTGCAGTTCACTCTG
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)