HsaEX0001319 @ hg19
Exon Skipping
Gene
ENSG00000174501 | AC073995.2
Description
ankyrin repeat domain 36C [Source:HGNC Symbol;Acc:32946]
Coordinates
chr2:96517442-96519609:-
Coord C1 exon
chr2:96519457-96519609
Coord A exon
chr2:96517874-96517944
Coord C2 exon
chr2:96517442-96517535
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATTCTTTGTTTTAGTTT
3' ss Score
8.77
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
GTAGCTGTGAGACAGCTTCAACAAAAACAAGATGATGTCTTAAACAAACGATCAGCAACAAAAGCTTTGCTGGATGCTTCATCGCGTCACTGCATCTATTTAGAAAATGGGATGCAGGATTCAAGGAAGAAATTAGACCAGATGAGAAGTCAA
Seq A exon
TTTCAAGAAATACAGGATCAACTTACAGCTACTATAAGATGTACTAAGGAGATGGAAGGCGACGCACAAAA
Seq C2 exon
GCTTGAAGTAGAAAATGTCATGATGAGAAAAATTATTAAAAAACAGGATGAACAAATTGAGCGGTTTGAGAAAATCCTGCAGCATTCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174501_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCTGGATGCTTCATCGC
R:
TGCAGGATTTTCTCAAACCGCT
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)