BtaEX0003517 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17920573-17924868:-
Coord C1 exon
chr13:17924720-17924868
Coord A exon
chr13:17921431-17921501
Coord C2 exon
chr13:17920573-17920666
Length
71 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTTTTTTTTTTAGTTG
3' ss Score
8.49
5' ss Seq
AAAGTACGA
5' ss Score
4.65
Exon sequences
Seq C1 exon
GTGTGAGACAACTTCAACAAGAACTGGCTGATACCCTGAAAAAGCAGTCTATGTCAGAGGCATCACTGGAGGTCTTGTCACGTTATCGTGCCAACTTAGAAGTTGAGGCACAGGATTTAAAGAAGAAGTTAGGTCAACTCACAAGTCAG
Seq A exon
TTGCAAGAAGCACAGGATCAACTTACAGAGGCTGTGAGATGTGCTGAGAAAACACAGGATCGCGTCCAAAA
Seq C2 exon
GCTTGAAATTGAAAATGCCGAGTTACAAACTACAGTCAAAAAGCAAGCGGGCAAAATTGAACAGCTTCAGAAAAACCTGTTAAGTACAAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'28-29,'28-28,29-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.083 C2=0.344
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGATACCCTGAAAAAGCA
R:
TTTGCCCGCTTGCTTTTTGAC
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development