RnoEX0009602 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150562605-150566892:-
Coord C1 exon
chr4:150566740-150566892
Coord A exon
chr4:150563032-150563102
Coord C2 exon
chr4:150562605-150562698
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTCTTTATTCCAGCTG
3' ss Score
9.29
5' ss Seq
AAAGTACAG
5' ss Score
-0.9
Exon sequences
Seq C1 exon
GTAGCTGTGAGGCAACTTCAGCAAGAACTGGCAGATACCCTAAAAAAGCAGTCCATGTCAGAGGCTTCGCTAGAGGTTTCCTCCCGTTACCGCAGCAGTCTAGAAGAAGAGGCCAGAGACTTAAAGAAGAACTTAAGTCAGCTCAGAAGTCAG
Seq A exon
CTGCAAGAGGCGCAGGACCAACACAGAGAGGCTGTTCAGCGCGCTGAGAAGATGCAGGACCACCTACAAAA
Seq C2 exon
GCTTGAACTTGAAAATTCCAAGTTCAAAATTACAATAAAAACGCAATCAGAGGAAATTGAACAACTTCAGGAAAACCTGTCAAATGGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'38-36,'38-35,39-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.917 C2=0.406
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCATGTCAGAGGCTTC
R:
TGTTCAATTTCCTCTGATTGCGT
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]