MmuEX6006493 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118517896-118521993:-
Coord C1 exon
chr6:118521841-118521993
Coord A exon
chr6:118518341-118518411
Coord C2 exon
chr6:118517896-118517989
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTCTTTATTCCAGTTG
3' ss Score
9
5' ss Seq
AAAGTACAG
5' ss Score
-0.9
Exon sequences
Seq C1 exon
GTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAG
Seq A exon
TTGCAGGAGGCGCGGGATCAACACAGAGAGGCTGTACACCATGCTGAGAAGATGGAAGACCACCTACAAAA
Seq C2 exon
GCTTGAACTTGAAAAATCCAAGTTCGAAATTACAATTAAAAAGCAATCAGAGGAAATTGATCAACTTCAGGAAAACCTGTCAAGGGTGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'33-40,'33-38,34-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.958 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGTCTCCTCCCGCTAC
R:
TTCACCCTTGACAGGTTTTCC
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types