HsaEX0004410 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27028852-27037323:-
Coord C1 exon
chr10:27037186-27037323
Coord A exon
chr10:27029286-27029356
Coord C2 exon
chr10:27028852-27028945
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTCTTTGTTTTAGTTG
3' ss Score
10.24
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
GTCGTTCAAGAGCGAAATGACGCTCAGAGGCAACTTTCTCGAGAACAGAATGCCAGAATGTTACAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGATTGAAATGGCTCAAAAGAAAATGAATTCTGAG
Seq A exon
TTGCAAGAAGCACAGGATCGACATACAGAAGCTGTCAGATGTGCTGAGAAGATGCAAGATCACAAGCAAAA
Seq C2 exon
GCTTGAAAAAGATAATGCCAAGTTAAAAGTTACAGTCAAAAAGCAAATGGACAAAATTGAGGAGCTTCAGAAAAACCTGTTAAATGCAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX4-4/10=C1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.958 C2=0.398
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000376087fB394
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATGACGCTCAGAGGCAA
R:
TGTCCATTTGCTTTTTGACTGT
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development