MmuEX6006493 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118467914-118472011:-
Coord C1 exon
chr6:118471859-118472011
Coord A exon
chr6:118468359-118468429
Coord C2 exon
chr6:118467914-118468007
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTCTTTATTCCAGTTG
3' ss Score
9
5' ss Seq
AAAGTACAG
5' ss Score
-0.9
Exon sequences
Seq C1 exon
GTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAG
Seq A exon
TTGCAGGAGGCGCGGGATCAACACAGAGAGGCTGTACACCATGCTGAGAAGATGGAAGACCACCTACAAAA
Seq C2 exon
GCTTGAACTTGAAAAATCCAAGTTCGAAATTACAATTAAAAAGCAATCAGAGGAAATTGATCAACTTCAGGAAAACCTGTCAAGGGTGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=0.958 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGTCTCCTCCCGCTAC
R:
TTCACCCTTGACAGGTTTTCC
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: