BtaEX0003527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17921431-17933208:-
Coord C1 exon
chr13:17933073-17933208
Coord A exon
chr13:17926491-17927447
Coord C2 exon
chr13:17921431-17921501
Length
957 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTTGTTTCACTTAGGTT
3' ss Score
9.9
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTCAAAGAACAAATTAATTCTGTGGATGACCTTGATGACTTAACTCAGTCATCTGAAACAGCTTCCGAGGATGGCGAGTTGCTTTACTATAAGAATTCCATGTTGCTAATTGAACAACTTGACACGGGGTGTAAAG
Seq A exon
GTTTCTGATAGTTGTGAAGAAGCAAAAGATCTGTTGCACAAAAACCACATGCTGCAGGAGGAAATTGCCATGCTAAGACTGGAGATGGATGCAGTGAAAATTCAGAACCAGGAAAAGGAAAAGAAATATTTTGAGGACATTGAAATTGTAAAAGGGAAGAATGATGATCTTCAAAAGGCAATAAAAGTGAATGAGGAAACGTTAACAAAGACTGTATCCCACTATACAGGCCAGCTTAATGCTCTGACAGCTGAGAATACAATGCTAAACTCTAAGCTGGAGAACGAAAAAGAAAGCAAACAAAGACTGGAGACGGAAGTGGAATCCTACCGTTCTAGACTGGCTGCTGCCTCACACGATCATGATCAATGTCAGACATCAAAAAGAGACCTGGAACTTGCCTTCCAGAGAGCAAGAGATGAGTGGTTACACTTGCAGGACAAAATGAAGTCCGATGCGGCTAATCTAAAAGATAATAACGAGATGCTTTCCCAGCAACTTTCTAGAGCGGAAAGTAAGTTCAATAACCTAGAAATTAAGCTGCATCACACTAGAGATTCTCTCAGAGAAAAGATTTTGATGTTAGAACGTGTCCAGAGAGACCTAAGCCAAACCGAGTGTCAAAAGCAGGAAATTGAACACATGTATCAGAACGAACAAGGCAAAGTGAATAAATATATTGGAAAGCAGGAATCCTTAGAGGAGAGATTATCTCAACTCCAGAGTGAAAACATGTTGCTCCGACAGCAACTGGACGATGCACAAAACAAAGCCGACAGTAAAGAGAAGACGGTCATCAGCATCCAAGACCAGTTTCAGCAGATCGTGAGAAAACTTCATGCCGAAAGTGAGAAACAAGGTCTGATGCTGGAGGAACGAAACAAGGAGTTAGTCAAGGAATGTGATCATTTAAAAGAGAGAATGTATCAGTATGAAAATGAGAAAGCAGAAAGAGAA
Seq C2 exon
TTGCAAGAAGCACAGGATCAACTTACAGAGGCTGTGAGATGTGCTGAGAAAACACAGGATCGCGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288_MULTIEX1-4/6=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.514 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
PF149151=CCDC144C=WD(100=95.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAATTAATTCTGTGGATGACC
R:
GGACGCGATCCTGTGTTTTCT
Band lengths:
198-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development