GgaEX7000334 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24093576-24097767:+
Coord C1 exon
chr1:24093576-24093759
Coord A exon
chr1:24096414-24097370
Coord C2 exon
chr1:24097615-24097767
Length
957 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTTTATCACACAGGAA
3' ss Score
9.76
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATTTTCTTTGAAACAAGAAGAGGAAAAGAGGCTTAGAGCTGAAATGCAATATGAAAAAATGAGAGAACAACTAAGGAGGAAAGAGGATCAATATTGTAGAGAAACAGAGGAGAGACAACAACTTGAGTTGCATGCAAGGAATTTAGAAACAGAGTTAATAACGCTGAGAAAGCTCATGAAACAG
Seq A exon
GAATCTGACACTAATGACAGAGAAAAGGATCTGCTGCACAGAAATCAGTTACTGCAAGAAGAGATTGCTATGCTAAGGCTAGAACTTGATCAAGTAAAACTTAGGCACCAGGAGAATGAAGGAAAATATTTAGAGGAAAATGAGTCTTTGAAAGAAAAAAATGATGACCTTCAGAAGGAACTTAAACTGAATGAGGAAGCCTTAACACAAACAGTACTTCAGTACAATGGACAGCTGAATTTACTCAAGACAGAATCTGCAATGCTAACTTCCAAGCTTGAACAGACAAAAGAAAGCAAAGACAGACTGGAAACAGAGATTGAATCATTCCGTTCCCGCTTGAATGCGGCTGTTCAAGATCTTGAACGTCATCAGTCATTGAAAAGTGATGTCGAACGAACATTTCAGAGAGAACGTGATGAATGGCTTCGTTTACAAGACAAGCTCCATTGTGAGCTCTCTGATGTGCGGGAGACCAACAAGAGCTTGTCTCAGCAGCTGAGTAAAATGGAAAGTAAAGCTAATAGTCTAGAAAATGAGCTTCACCAGTTTAAACAAACACTTCGAGAAAAAACACTGCTTTTAGAAATGACACAAAAAGACTTAAATCAAGCCCAGTGTCAGGCAAAAGAAAGTGATCATGCACGGCAACTTGAGAAAGATCAAGTCAGCAAATTTATGATAAAGCAGGAATCTATGCAGGAACGATTGGCCCAGCTCCAAAGTGAAAACCTTTTACTCCGTCAGCAGCTGGAAGATATGCAGAACAAGGGAATCATCAAAGAAAAGGTTGTGAATGATGTCCAGGACAAATTTAATGATATTTTCAACAAACTCAGAGCTGATACTGAAAAGCAAGTTTACCTCATGGAAGAGAGAAACAAGGAATTAAATACCAAGTGTACTGATTTAAGGGAACAAGTCTTTAAATATGAAACTGACAAGGTGGAAAGAGAG
Seq C2 exon
GGTATGGTCAGACAGCTACAGCAGGAGCTTGCTGATGCTCTTAAAAAGCAGTCTATGTCAGAAGCTTCCCTTGAAGTTACTACACGCTACCGCAGTGACCTTGAGGAAGACAAATTGCGCTTGCAAAAGGAATTGGACAGGGTTAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'29-29,'29-28,31-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.323 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF149151=CCDC144C=WD(100=95.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAAGAAGAGGAAAAGAGGCT
R:
GGTTTTAACCCTGTCCAATTCCT
Band lengths:
326-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]