HsaEX0004408 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27322154-27326252:-
Coord C1 exon
chr10:27326115-27326252
Coord A exon
chr10:27323725-27324681
Coord C2 exon
chr10:27322154-27322306
Length
957 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTTTGTTTTACTTAGAAT
3' ss Score
8.12
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCGTTCAAGAGCGAAATGACGCTCAGAGGCAACTTTCTCGAGAACAGAATGCCAGAATGTTACAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGATTGAAATGGCTCAAAAGAAAATGAATTCTGAG
Seq A exon
AATTCTCATAGTCATGAAGAAGAAAAAGACCTATCGCATAAAAATAGCATGTTGCAGGAAGAAATTGCTATGCTAAGACTAGAAATAGACACAATAAAAAATCAAAACCAGGAAAAAGAAAAGAAATGTTTTGAGGACCTTAAAATTGTAAAAGAAAAGAATGAAGACCTTCAGAAGACTATAAAACAGAATGAGGAAACATTAACACAAACAATATCCCAGTATAATGGACGGCTTAGTGTTCTGACAGCTGAGAATGCAATGCTAAATTCTAAACTGGAGAATGAAAAGCAAAGCAAGGAAAGACTGGAAGCAGAAGTTGAATCATACCATTCTAGATTGGCTGCTGCTATACATGATCGTGATCAAAGTGAGACATCAAAAAGAGAACTAGAACTTGCTTTCCAGAGAGCAAGAGATGAATGTTCTCGTTTACAGGACAAAATGAATTTTGATGTGTCTAACCTAAAAGATAACAATGAGATTCTTTCTCAACAACTATTTAAAACTGAAAGTAAACTCAATAGCCTAGAAATTGAGTTCCATCACACGAGAGATGCCCTCAGAGAAAAGACTTTGGGTTTAGAACGGGTACAAAAGGACCTAAGCCAAACACAGTGTCAAATGAAGGAAATGGAACAAAAGTATCAAAATGAACAAGTTAAAGTGAATAAATACATTGGAAAGCAGGAGTCTGTAGAGGAGAGATTGTCTCAACTACAAAGTGAGAATATGTTGCTTCGACAACAACTGGATGATGCCCACAACAAGGCTGACAATAAAGAGAAGACAGTGATTAATATCCAAGACCAGTTTCATGCTATTGTGCAAAAACTTCAAGCTGAGAGTGAAAAGCAAAGTCTTCTGCTAGAAGAAAGAAATAAGGAGTTAATCAGTGAATGTAATCACTTAAAAGAAAGACAGTATCAATATGAAAATGAAAAGGCAGAAAGAGAA
Seq C2 exon
GTTGTTGTGAGACAACTTCAACAAGAACTAGCTGATACCCTAAAAAAACAATCTATGTCAGAGGCTTCACTGGAGGTTACGTCACGTTATCGTATTAATTTAGAAGATGAGACACAGGATTTAAAGAAGAAATTAGGTCAAATCAGAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.401 C2=0.301
Domain overlap (PFAM):
C1:
NO
A:
PF149151=CCDC144C=WD(100=95.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTTCAAGAGCGAAATGACG
R:
TTTCTTCTTTAAATCCTGTGTCTCAT
Band lengths:
270-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)