MmuEX7003482 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118521841-118525082:-
Coord C1 exon
chr6:118524945-118525082
Coord A exon
chr6:118522939-118523895
Coord C2 exon
chr6:118521841-118521993
Length
957 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTTTCCTTTCTTAGGTT
3' ss Score
12.29
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTCTTAGAGGAACGAAATGAGACTCAGAGGCAGCTCTCCCGAGAACAGAATGCCAGAATGTTACAAGATGGGATTCTTGCAAGTCACCTCTGCAAGCAAAAGGAGATAGAAATGACGCAGAAGAAAATGACTTCTGAG
Seq A exon
GTTTCTGTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCTGTGTTACGACTGGAAATGGACACAATAAAAAGCCATAACCAGGAGAAGGAAAAGAGGTATCTTGAGGATATTAAGATTGCAAATGAGAAGAATGACAACCTTCAAAGGATGGTCAAGCTGAATGAAGAAACATTTACAAAAACCATATTCCAGTATACTGGACAGCTTAATAGTCTTAAAGCTGAGAACACAATGCTGAGTTCTAAGCTGGACAACGAAAAACAAAATAAGGAGAGACTGGAAACAGACGTTGAGTCGTTCCGATCTAGGCTGGCTTCTGCTCTGCATGATCACGCTGAAATTCAGACAGCAAAAAGAGACCTAGAAATTGCTTTCCAGAGAGCGAGAGATGAGTGGTTTCGTGTGAAAGACAAGATGAATTTCGATATGTCTAACCTCCGAGATAACAATGAGGTTCTCTCCCAACAGCTTTCTAAAACTGAAAGGAAGTTGAATAGCCTAGAAATTGAGTTTCATCACACGAAAGATGAGCTTCGAGAGAAGACGCTGGCGTTAAAGCATGCGCAGAGAGACCTGAGCCAGACCCAGTGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAACAAGGCAAAGTGAGCAAGTTCATGGGGAAGCAGGAGTCCATAGAGGAGAGGCTGGCCCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGACGCTGCCAACAAGGCCGAGAGCAAAGACAAGACCATAGTCAACATCCAAGACCAGTTCCAGGATGTGCTAACCAGGTTCCAAGCTGAGAGTCAGCGGCACAGCCTGAGGCTAGAAGACAGAAACCAGGAGTTAGTCAGTGAGTGCAGCCATCTAAGAGAAAGACTGTGTCAGTACGAGAACGAGAAAGCCGAAAGAGAG
Seq C2 exon
GTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'31-36,'31-33,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=0.417 C2=0.412
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.7=100)
A:
PF0157614=Myosin_tail_1=PD(42.9=44.2),PF149151=CCDC144C=WD(100=95.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAACGAAATGAGACTCAGA
R:
CTGACTTCTGAGCTGACCTAAT
Band lengths:
286-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types