RnoEX0009601 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150566740-150570181:-
Coord C1 exon
chr4:150570044-150570181
Coord A exon
chr4:150567869-150568825
Coord C2 exon
chr4:150566740-150566892
Length
957 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCTTTGCTTACGTAGGCT
3' ss Score
8.42
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTATTAGAGGAACGGAATGAGACTCAGCGGCAGCTTTCCCGAGAACAGAATGCCAGAATGTTGCAGGATGGGATTCTTGCTAATCACCTCTGCAAGCAAAAGGAGATAGAAATGGAGCAGAAGAAGATGACTTCCGAG
Seq A exon
GCTTCTCTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCCATGTTAAAACTGGAAATGGACACAATAAAAAACCATAACCTGGAGAAGGAAAGGAAGTATCTTGAGGATATTAAGATTGCAAATGAGAAAAATGATAACCTTCAAAGGATGATAAAGCTGAATGAAGAAACGTTTACAAAAACAATATTCCAGTACAGTGGACAGCTTAACAATCTTAAAACTGAGAACGCGATGCTGAGTTCCAGGCTGGACAACGAGAAACAAAGCAAGGAGCGACTGGAGACTGACGTCGAGTCATTCCGGTCTAGACTGGCTTCTGCACTGCATGAGCACGCTGAAATCCAGACAGCAAAAAGAGACCTAGAAACTGCTTTCCAGAGAGCAAAAGATGAGTGGTTTCGTTTGAAGGACAAGATGAATTTTGATATGTCTAACCTCAGGGATAACAACGAGGTCCTCTCCCAACAGCTTTCTAAAACTGAAAGAAAGTTGAATAGCCTCGAAACCGAGTTTCATCACACACAGGGTGAGCTCAGAGAGAAGACGCTCGCTTTGAAGTGTGTGCAGAGAGACCTCAGCCAGACGCAGAGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAGCAAGGGAAGGTGAATAAATACATGGGAAAGCAGGAGTCCATAGAGGAGAGGCTGGCTCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGATGCCGCCAACAAGGCCGAGAGCAAAGACAGGACGATAGTGAGCATCCAAGACCAGTTCCAGGAGATGCTCAACAGAGTCCAAGCCGAGAGTCAGAAGCACAGCCTAAGGCTGGAAGACAGAAATCAGGAGTTAATCATCGAGTGCAGCCATCTGAAAGAAAGAATGTGTCAGTACGAGAATGAGAAAGCAGAAAGAGAA
Seq C2 exon
GTAGCTGTGAGGCAACTTCAGCAAGAACTGGCAGATACCCTAAAAAAGCAGTCCATGTCAGAGGCTTCGCTAGAGGTTTCCTCCCGTTACCGCAGCAGTCTAGAAGAAGAGGCCAGAGACTTAAAGAAGAACTTAAGTCAGCTCAGAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'35-33,'35-31,37-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.480 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
PF149151=CCDC144C=WD(100=95.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAACGGAATGAGACTCAG
R:
CTGACTTCTGAGCTGACTTAAGT
Band lengths:
286-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]