BtaINT0018327 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17924720-17927447:-
Coord C1 exon
chr13:17926487-17927447
Coord A exon
chr13:17924869-17926486
Coord C2 exon
chr13:17924720-17924868
Length
1618 bp
Sequences
Splice sites
5' ss Seq
TGAGTATCC
5' ss Score
-6.58
3' ss Seq
CAGAGCATCTTATTAGGCAGGTG
3' ss Score
-2.04
Exon sequences
Seq C1 exon
GTTTCTGATAGTTGTGAAGAAGCAAAAGATCTGTTGCACAAAAACCACATGCTGCAGGAGGAAATTGCCATGCTAAGACTGGAGATGGATGCAGTGAAAATTCAGAACCAGGAAAAGGAAAAGAAATATTTTGAGGACATTGAAATTGTAAAAGGGAAGAATGATGATCTTCAAAAGGCAATAAAAGTGAATGAGGAAACGTTAACAAAGACTGTATCCCACTATACAGGCCAGCTTAATGCTCTGACAGCTGAGAATACAATGCTAAACTCTAAGCTGGAGAACGAAAAAGAAAGCAAACAAAGACTGGAGACGGAAGTGGAATCCTACCGTTCTAGACTGGCTGCTGCCTCACACGATCATGATCAATGTCAGACATCAAAAAGAGACCTGGAACTTGCCTTCCAGAGAGCAAGAGATGAGTGGTTACACTTGCAGGACAAAATGAAGTCCGATGCGGCTAATCTAAAAGATAATAACGAGATGCTTTCCCAGCAACTTTCTAGAGCGGAAAGTAAGTTCAATAACCTAGAAATTAAGCTGCATCACACTAGAGATTCTCTCAGAGAAAAGATTTTGATGTTAGAACGTGTCCAGAGAGACCTAAGCCAAACCGAGTGTCAAAAGCAGGAAATTGAACACATGTATCAGAACGAACAAGGCAAAGTGAATAAATATATTGGAAAGCAGGAATCCTTAGAGGAGAGATTATCTCAACTCCAGAGTGAAAACATGTTGCTCCGACAGCAACTGGACGATGCACAAAACAAAGCCGACAGTAAAGAGAAGACGGTCATCAGCATCCAAGACCAGTTTCAGCAGATCGTGAGAAAACTTCATGCCGAAAGTGAGAAACAAGGTCTGATGCTGGAGGAACGAAACAAGGAGTTAGTCAAGGAATGTGATCATTTAAAAGAGAGAATGTATCAGTATGAAAATGAGAAAGCAGAAAGAGAAGTGA
Seq A exon
GTATCCAGAAGAAGAAATTCTCGGACTTCCTGAAAGAAAGTTCAAAGTGATTCTTGATTCTGGCTAAATGTTGAATCTAGTTAAATATAAAAAATACATAGGCTGTGAATCTATGGTCTCTAAACCAGCCTAAAAGCATACCTTATATCCAGCAAATGAAAATTAGACCCAAGAGATGCTTTACTTTGAGTAGAGACAGCATATTGCTTTGAAATGTTAAGAGATTCAGTTCTAAATTATTAATATAGATAGTGTTAGTAATTTACTCTTTTACTATTAGGATAATAATTTTAATCTTTATGTTACCACATTTCAGTATCATGATGAAGCAGATAAATGAAATGCTCAAACCTAAAATGAATATTTCAAAATTAAGTTTCAATTACATGGATTACCTTGACAGTCAATTCTAGGTTTCCCAGATGCTATATTTTATATATTGTACTTTGGCTTCGGTAGCTTGTCATACCATTTTGTCATATTTGTTGGTATAATTTTAATTTTATTTATATAAATTTGAATTAATTTGGGAGAATTTCAGCCTTGAATCATTTTTTCTTATGGCCTCTCAACTCTTTAAAGGCGTCTATTTGTCATTGAATCATAATTTGGGACTCAAGTGGTGAGCTTTAGCCAAACTATTCCTGATTTAATCTTCCCACTGCTATTTATGTTATTTACTTAGAGCATTTTTACAAACAATTTGCTCGTAATTCTCATTTTAAGGATCAATTAGTATCATGTGAATACAAATTTGTCCACTAAAAATGAAGGGTGGCAGGATTCATGAGCAGCAGGAATGGAGTGAGTCAGGGAGAGGGTTGTAGGGGCTGTGGTCTGGAGGCAGGTGGAGGCTAGGATATTGAGGCTCCTTGAAGGCCATGGGAGCAACCTTACTTTTTAAATTTCATTTTTCTTTTATATTGGAATATGGTTGATTTACAATTTTGTGTTAGTTTCAGATGTACAGGAAATTGATTCAGTTATACACATATCCATTCTTTTTCTGTTCCTTTTCCCAGGTAGGTGACTATAGAATATTGAGTAGAGTTCCCTGTGCTCTCCAGTAGGTCCTTACGGTTAGCCAAGGGCAAAGGTGGGGAGGGGGCATAAATTAGGAGTTTGGGATTAACATAGACACCCTACTAGATATAAAAGAGATAAGTAACAAGGGAATGGCCCCATTTTTCTGCTGAGGTAGAAATCTATTGGAAAGATCTAAGCACTGGTTGGAATATGTGAAGATCTCCAAGTTAATCAAAGCTTCTAATAAAAAAGGAAAGGAAAATATTTCCACAGTGTGGAATTTTCCATCACTTTTCCCACCTACACACTTGTTTCTTTCTAGACATGAGGTGGTGAAGCTCTGCAGATTTATTGGGAGGGGCAGGGCGTGGTCAGTGGGGCCACGTCCTTTGTCTGAGTAACTTAATATCAGGAAGGCTGGAGGGTGACCCCTTCTGTGTCTGTAACCAAACTCAGTGAGGAGGAAAAAGAAGGTGAGTTGCTGTCTGTGGTGATAATTTTCAAAGTCCATATGTTGGAGTTATCTATTATTAACATAATGTAATTGTAAAGTGATTTGATAAACTCAGTGACAGAGCATCTTATTAGGCAG
Seq C2 exon
GTGTGAGACAACTTCAACAAGAACTGGCTGATACCCTGAAAAAGCAGTCTATGTCAGAGGCATCACTGGAGGTCTTGTCACGTTATCGTGCCAACTTAGAAGTTGAGGCACAGGATTTAAAGAAGAAGTTAGGTCAACTCACAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGCAGGAATCCTTAGAGG
R:
GACCTCCAGTGATGCCTCTGA
Band lengths:
355-1973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development