GgaINT0109015 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24096414-24097767:+
Coord C1 exon
chr1:24096414-24097370
Coord A exon
chr1:24097371-24097614
Coord C2 exon
chr1:24097615-24097767
Length
244 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TCATCTAACTCTTTCCGTAGGGT
3' ss Score
10.14
Exon sequences
Seq C1 exon
GAATCTGACACTAATGACAGAGAAAAGGATCTGCTGCACAGAAATCAGTTACTGCAAGAAGAGATTGCTATGCTAAGGCTAGAACTTGATCAAGTAAAACTTAGGCACCAGGAGAATGAAGGAAAATATTTAGAGGAAAATGAGTCTTTGAAAGAAAAAAATGATGACCTTCAGAAGGAACTTAAACTGAATGAGGAAGCCTTAACACAAACAGTACTTCAGTACAATGGACAGCTGAATTTACTCAAGACAGAATCTGCAATGCTAACTTCCAAGCTTGAACAGACAAAAGAAAGCAAAGACAGACTGGAAACAGAGATTGAATCATTCCGTTCCCGCTTGAATGCGGCTGTTCAAGATCTTGAACGTCATCAGTCATTGAAAAGTGATGTCGAACGAACATTTCAGAGAGAACGTGATGAATGGCTTCGTTTACAAGACAAGCTCCATTGTGAGCTCTCTGATGTGCGGGAGACCAACAAGAGCTTGTCTCAGCAGCTGAGTAAAATGGAAAGTAAAGCTAATAGTCTAGAAAATGAGCTTCACCAGTTTAAACAAACACTTCGAGAAAAAACACTGCTTTTAGAAATGACACAAAAAGACTTAAATCAAGCCCAGTGTCAGGCAAAAGAAAGTGATCATGCACGGCAACTTGAGAAAGATCAAGTCAGCAAATTTATGATAAAGCAGGAATCTATGCAGGAACGATTGGCCCAGCTCCAAAGTGAAAACCTTTTACTCCGTCAGCAGCTGGAAGATATGCAGAACAAGGGAATCATCAAAGAAAAGGTTGTGAATGATGTCCAGGACAAATTTAATGATATTTTCAACAAACTCAGAGCTGATACTGAAAAGCAAGTTTACCTCATGGAAGAGAGAAACAAGGAATTAAATACCAAGTGTACTGATTTAAGGGAACAAGTCTTTAAATATGAAACTGACAAGGTGGAAAGAGAG
Seq A exon
GTAAGCTGTACAGTTAGAAGAAATTAAAATGTTTCAAATCATAAAGTGATTTTGTATTTCTAAAATGCATCAGGTATAAGTTATATGCGTAGGACTAAATTATGTTGTTTTGTTGTTGTTCATTGTTCTTCTCTTGGAATTAAGGAAGACTTTGATAAATGGCTGAATTGTATAATCTAGTCAGTTTAAAGGAGTAAAGTCAAACTTCATGTTTTTCCTCATGTTCATCTAACTCTTTCCGTAG
Seq C2 exon
GGTATGGTCAGACAGCTACAGCAGGAGCTTGCTGATGCTCTTAAAAAGCAGTCTATGTCAGAAGCTTCCCTTGAAGTTACTACACGCTACCGCAGTGACCTTGAGGAAGACAAATTGCGCTTGCAAAAGGAATTGGACAGGGTTAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCAGGAACGATTGGCCC
R:
AAGAGCATCAGCAAGCTCCTG
Band lengths:
305-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]