HsaINT0008654 @ hg38
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27033225-27035752:-
Coord C1 exon
chr10:27034796-27035752
Coord A exon
chr10:27033378-27034795
Coord C2 exon
chr10:27033225-27033377
Length
1418 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTAACAAAATGTCTTATCAGGTT
3' ss Score
5.47
Exon sequences
Seq C1 exon
AATTCTCATAGTCATGAAGAAGAAAAAGACCTATCGCATAAAAATAGCATGTTGCAGGAAGAAATTGCTATGCTAAGACTAGAAATAGACACAATAAAAAATCAAAACCAGGAAAAAGAAAAGAAATGTTTTGAGGACCTTAAAATTGTAAAAGAAAAGAATGAAGACCTTCAGAAGACTATAAAACAGAATGAGGAAACATTAACACAAACAATATCCCAGTATAATGGACGGCTTAGTGTTCTGACAGCTGAGAATGCAATGCTAAATTCTAAACTGGAGAATGAAAAGCAAAGCAAGGAAAGACTGGAAGCAGAAGTTGAATCATACCATTCTAGATTGGCTGCTGCTATACATGATCGTGATCAAAGTGAGACATCAAAAAGAGAACTAGAACTTGCTTTCCAGAGAGCAAGAGATGAATGTTCTCGTTTACAGGACAAAATGAATTTTGATGTGTCTAACCTAAAAGATAACAATGAGATTCTTTCTCAACAACTATTTAAAACTGAAAGTAAACTCAATAGCCTAGAAATTGAGTTCCATCACACGAGAGATGCCCTCAGAGAAAAGACTTTGGGTTTAGAACGGGTACAAAAGGACCTAAGCCAAACACAGTGTCAAATGAAGGAAATGGAACAAAAGTATCAAAATGAACAAGTTAAAGTGAATAAATACATTGGAAAGCAGGAGTCTGTAGAGGAGAGATTGTCTCAACTACAAAGTGAGAATATGTTGCTTCGACAACAACTGGATGATGCCCACAACAAGGCTGACAATAAAGAGAAGACAGTGATTAATATCCAAGACCAGTTTCATGCTATTGTGCAAAAACTTCAAGCTGAGAGTGAAAAGCAAAGTCTTCTGCTAGAAGAAAGAAATAAGGAGTTAATCAGTGAATGTAATCACTTAAAAGAAAGACAGTATCAATATGAAAATGAAAAGGCAGAAAGAGAA
Seq A exon
GTAAGTATCAAGAAAGATAAATATTTTTCAAACCTCCTGAAAGAAAATTTAAAATAATATATAGTTATGTAGTTAACTATAAAAATAAATAGATAAGCTTATTTACTCTATCAGTTTAGAAACATCCCTTGTTTTCAGCAAATAAAAGAGCTGAGAGATGCTTTACTTTGAGTAAAGATATTGTATCATCTATGAAATTTTGAGTTTTAAGTTATGAATTGTTATAGACTAGTATGAATAGTAAACTAATGTGAATAATGTAGTCTTTTACTGCTGAAGTAATAATTTTAGTGTCTTTATGTTGCCACATCTTAAGAACATTTCCATTTGTCTGCCACCATGAAACAGATAAATGGAAATGCTTATACCTGAAATGAGGATTTTGAAGTTAAGGTTCAATTAAGTGTGTTATTTTGACAGTTAATTCCAGATTTCCAGATAAACTGAAGTATATTGCTATATCTCTTAATACTTTTCTGTCAGTAGCTTTTTATATATTTCAGTTGATGTGATTTTATTTTTATTCTTGTCAATTTGACTTGTCTAAAAATATTTCAATCTCAAATTACATATTGTTATGATCTCTCAATTCTTTAAAGCATGTACTTTTTATTAAACCATAATTTGGGACAAATGTGAATTTTAGCAACCATATTTGACTTAATCTCCCCAGTGGTATTTATAATTTACTTTGAATATATTATGAGCAAATAATTTGCTCATAATTTTCATTTCAGTGCCCAATGACTATCATTTGGGTATAACTTTGTTCAGTATAAAGATAAGTAAGTGTAGCGATTTGTGATTTATTAGTTTGGCATTGGACCACCATTTTCACACTAATGAGGGGTGGCAGGATGCACAGGCAGCAAGAATGGAGTGAGTAGGGGAGAGTCATAGCAGCCGAGGTCAGGGAGGCAAGTGGAGGCCAGGTTACCTAGGGCCTCTAAGGCCATTGGAATTTACCTGTATTCTGAGATAGGAATCTATTGGAATAATTTGAGCAAGCAATTAAGTATCTGAGGAGCTCTGAAGTTGATTTGATGTTCTAATAAAAAAGAGCAAAAATGTTTCATAGGGTACAATTAATCACTACCAGTTCCACTCACATAACTATTTCGAGACTTCAGTAGATTGTTAAGCAGTGTAAATTCATGGGGGGATGAATGAATAATGGGCTGAATCTGTTGTTTAAGTAACGTCATACCTAATTGGCAGGAAGATAACACCTGTGTCCTTAACTGAATTCAGTAATAAACAGCAATGTGTACATATGAGGACAAGAAGGTGAATCAATGTATGTGGTAATATTTTTTAAGTTGTATATGTCATAGTTAAATATTATTAACATAATTTATTTTTTAACATAACTTAATAATAAGGTGATTTATAAAATCAGTAACAAAATGTCTTATCAG
Seq C2 exon
GTTGTTGTGAGACAACTTCAACAAGAACTAGCTGATACCCTAAAAAAACAATCTATGTCAGAGGCTTCACTGGAGGTTACGTCACGTTATCGTATTAATTTAGAAGATGAGACACAGGATTTAAAGAAGAAATTAGGTCAAATCAGAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890:ENST00000376087:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.401 A=NA C2=0.318
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGTCTGTAGAGGAGAGA
R:
ACGTGACGTAACCTCCAGTGA
Band lengths:
358-1776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development