MmuINT0015551 @ mm10
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118521841-118523895:-
Coord C1 exon
chr6:118522939-118523895
Coord A exon
chr6:118521994-118522938
Coord C2 exon
chr6:118521841-118521993
Length
945 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGTAACAAATGTCTTACCAGGTA
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTTTCTGTTAGTCATGAAAAAGAAAAAGATCTATTGCATAAAAACCAGAGGCTGCAGGATGAAGTTGCTGTGTTACGACTGGAAATGGACACAATAAAAAGCCATAACCAGGAGAAGGAAAAGAGGTATCTTGAGGATATTAAGATTGCAAATGAGAAGAATGACAACCTTCAAAGGATGGTCAAGCTGAATGAAGAAACATTTACAAAAACCATATTCCAGTATACTGGACAGCTTAATAGTCTTAAAGCTGAGAACACAATGCTGAGTTCTAAGCTGGACAACGAAAAACAAAATAAGGAGAGACTGGAAACAGACGTTGAGTCGTTCCGATCTAGGCTGGCTTCTGCTCTGCATGATCACGCTGAAATTCAGACAGCAAAAAGAGACCTAGAAATTGCTTTCCAGAGAGCGAGAGATGAGTGGTTTCGTGTGAAAGACAAGATGAATTTCGATATGTCTAACCTCCGAGATAACAATGAGGTTCTCTCCCAACAGCTTTCTAAAACTGAAAGGAAGTTGAATAGCCTAGAAATTGAGTTTCATCACACGAAAGATGAGCTTCGAGAGAAGACGCTGGCGTTAAAGCATGCGCAGAGAGACCTGAGCCAGACCCAGTGCCAGATGAAGGAGGTGGAGCACATGTTTCAGGACGAACAAGGCAAAGTGAGCAAGTTCATGGGGAAGCAGGAGTCCATAGAGGAGAGGCTGGCCCAGCTGCAGAGTGAGAACACGCTGCTCCGGCAGCAGCTGGACGACGCTGCCAACAAGGCCGAGAGCAAAGACAAGACCATAGTCAACATCCAAGACCAGTTCCAGGATGTGCTAACCAGGTTCCAAGCTGAGAGTCAGCGGCACAGCCTGAGGCTAGAAGACAGAAACCAGGAGTTAGTCAGTGAGTGCAGCCATCTAAGAGAAAGACTGTGTCAGTACGAGAACGAGAAAGCCGAAAGAGAG
Seq A exon
GTGAGTATCAACAAAGAGAAGTATAATTTAACCTTCCGTTCCTTCCCATCTCACGGGTATGGGTGTGCGCCTGCCTGTACGTCTGTGCACTGCGTGCATGCAGAATGATTGCAGAGGCCAGGTGACGGCATCAGGTCCCTTGGAATGGGAGGTCATGAACCGCACTGTGGGTGCTAGGAATCGAACCAGGTTCTCTGAAAAAGCAGTCATTGCTCTTAACCACTGAGCCATCTCTCCAATCCCAAGAAAGATAAACATTTTAAAAACATCCCAAAGGGAAATTCAAAATATGGTTTGTTAATACTAAGCATTAAGTCTAGCTAAAAAAAAAAATCTAGTGGCTCTGCCCAAAGCTGGGCAGAATCCTTTGGTGCTTGACCAAAGGACGGTAACTGAAGACCAAGCACAGAAACACAAGGACCTCATGATCTCCCTTAAAATGAAGGATCTTAATAAACTAATTTCTTAAAAGCCCCAAAGTACAATAGTGGTTCTTGGAGCTGGGGGTGAGATGAGGAGGGAGGTGTGACGGGAGATGTGGGTCAGTGGGTCAGTTACAGTGAAGAACAGGAAGCGTGGAGCTACTGAACAATAACATACCCTGTATTTCAACTAGAAGAAATGACTTCACCAATCAGTGTTTGAAGCCATAACTGTGTCTAACTTGATTTAAGCACTAGGCAGTGTATACATGTATCAAGACAGTATGTATACTATGTACAATCTTATGTTTTTTCATATCAGTTAGAAAATGGAATTTTTAAATATGAGTAAATTAAAAATAAAATACGTAAAAAAGTTTCTCAAGGTAGCATCCGTCCCTGCCAGCCCCACTGACACACACTATTGTGTGCAGTGATATTCCTCAGAGCGTGTGGAAGAAAGAAATAGTATGAGTAGATGTTGTAATATGTTTTATAAAATTAGTAACAAATGTCTTACCAG
Seq C2 exon
GTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827:ENSMUST00000112830:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(42.9=44.2),PF149151=CCDC144C=WD(100=95.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAAGCAGGAGTCCATAG
R:
GAAGCCTCTGACATCGACTGC
Band lengths:
346-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types