HsaEX0003522 @ hg19
Exon Skipping
Gene
ENSG00000198752 | AL117209.2
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:1738]
Coordinates
chr14:103406564-103410824:-
Coord C1 exon
chr14:103410228-103410824
Coord A exon
chr14:103407291-103407735
Coord C2 exon
chr14:103406564-103406661
Length
445 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCTTTTTGTATTCAGAAG
3' ss Score
7.73
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCACCTCTATCCGTGGTCGTCCCTTGATGGAGCGGAAGGCAGCTTTGACATCAAGCTTCCGGAAACCAAAGGCTGCCAGCTCATGGCCACGGCCACACTCAAGAGGAACTCTGGCACCTGCCTGTTTGTGGCCGTGAAACGGCTGATCCTTTGCTATGAGATCCAGAGAACGAAGCCATTCCACAGAAAGTTCAATGAGATTGTGGCTCCCGGCAGCGTGCAGTGCCTGGCGGTGCTCAGGGACAGGCTCTGTGTGGGCTACCCTTCTGGGTTCTGCCTGCTGAGCATCCAGGGGGACGGGCAGCCTCTAAACCTGGTAAATCCCAATGACCCCTCGCTTGCGTTCCTCTCACAACAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCGAAAGCGAGGAGTACCTGCTTTGCTTCAGCCACATGGGACTGTACGTGGACCCGCAAGGCCGGAGGGCACGCGCGCAGGAGCTCATGTGGCCTGCGGCTCCTGTCGCCTGTA
Seq A exon
AAGAAAAGTCCTGATCTTGTAGCCTGTTTGGAGTCTGTGATAGAAACAGAGCAGAAGGCTTTTAAAATGCATCTTCAGACAGTGAGGTGTGTCCTGATGCAGGATTAACCTTGAACTCCGGAGGCAGAAGAGCCAGGAAGGAGCACTGAGCTGGAGCTCTCTTGCATTTGGGGCTTGCCGCCTCCCAGCTCTGCGTTTCTGCAAGCTGATGGCCAGGAGCCAAGCTACGCTGAGGGGCTGTGGGGGCAGTGAGCGTGCCACCCACACAGAGGGACTGAGCGGAAGACGCACACCGCTCCCTTGTCGTGTGGCACAGCTGTGTCACTGCTCTTCTAAACGTGGAGAAAGCCCCTTAAACTCCAAATGGCCAAAGGCTTTGCAGTCCTTGGTTTCACATCCGTGGCACCTTGGGTGGAGTTGCTTCTGTAAGCCAACAGATGAGCAG
Seq C2 exon
GTTGCAGCCCCACCCACGTCACGGTGTACAGCGAGTATGGCGTGGACGTCTTTGATGTGCGCACCATGGAGTGGGTGCAGACCATCGGCCTGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.8=100)
A:
PF0078017=CNH=PD(0.1=0.0)
C2:
PF0078017=CNH=FE(12.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGATTGTGGCTCCCGG
R:
CCATACTCGCTGTACACCGTG
Band lengths:
348-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)