HsaEX0004359 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:38543239-38572059:-
Coord C1 exon
chr9:38572006-38572059
Coord A exon
chr9:38571122-38571201
Coord C2 exon
chr9:38543239-38543363
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTCTCTGCGGCAGCAC
3' ss Score
5.93
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTTTTGCTATGTTGAGCACTTGCTCCCGTCTACTTTCTTTTGTAGAATCCACTG
Seq A exon
CACCAAGGAAGCACAGGCGAGCCCTTCCCATCATGCGCTCACTAGTCCCCAACAGAAGAACCACTGTCGCATCCACTGAG
Seq C2 exon
AGCAGGACAAACAGGCCCGGTGGTGTCAGGAGCCCAGGTCTCCAGCTGGAGGGAACGTCAACCCTGCAGTGGGAGCAGGGGCCCATCGCACATCCTAGGCACAGATGCTAATGCAGGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283486-'3-13,'3-4,4-13
Average complexity
C3
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGCTCCCGTCTACTTT
R:
CTGTGCCTAGGATGTGCGATG
Band lengths:
143-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development