HsaEX0004359 @ hg19
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:23643]
Coordinates
chr9:38563462-38572056:-
Coord C1 exon
chr9:38572003-38572056
Coord A exon
chr9:38571119-38571198
Coord C2 exon
chr9:38563462-38569244
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTCTCTGCGGCAGCAC
3' ss Score
5.93
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTTTTGCTATGTTGAGCACTTGCTCCCGTCTACTTTCTTTTGTAGAATCCACTG
Seq A exon
CACCAAGGAAGCACAGGCGAGCCCTTCCCATCATGCGCTCACTAGTCCCCAACAGAAGAACCACTGTCGCATCCACTGAG
Seq C2 exon
CAATTCCATTCTGCATCTCCTCTGGACACCCCCAGGACCACCAGGACAACCCCATCATGGCCCTGTCACCAGGCCCAGTCTCGCTCCGTGATAACCAAGATGCAGGTCCAGAGACAACCGCCCTACTTGGTTCCTGCATCTGACCCCCCTTGGTGGGTAGTGACCAGCCCAACATGGAAGAAGCCAGGGCAGCATGCAGCCAGCTGCCCTGCAGCCCCAGATGGCACCTGGGCCTTGGGAAGTCATTCTCAAAGGGGAAGCTGGAAACTTTGATGTCCCTGGAGGGAAGGGTGAACGTGGCATCCGAACAACCCTGGCAGCCAGCAGCATCTTGTCATCCAACCTGTGGGACAGAGGCCCCCTGCTGGGGAGCGAGATCCATACCTAAAGGGTCCTGGCCCAGTTGGGCCTCATCCTGGGCCCTGGGAGGGGAGGGGCACTATGGTCCCCCCAGCAGCAGTCAGCATTACCACCCAGGGGACTCAGCCTTCTGTGGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_MULTIEX1-1/9=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.704 C2=NA
Domain overlap (PFAM):
C1:
PF139491=ALIX_LYPXL_bnd=PD(4.3=31.6)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGCTCCCGTCTACTTT
R:
GATGCAGGAACCAAGTAGGGC
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)