HsaEX0004360 @ hg19
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:23643]
Coordinates
chr9:38563462-38571198:-
Coord C1 exon
chr9:38571119-38571198
Coord A exon
chr9:38569398-38569438
Coord C2 exon
chr9:38563462-38569244
Length
41 bp
Sequences
Splice sites
3' ss Seq
CATGAAGGATTGTTTTCTAGGTG
3' ss Score
5.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CACCAAGGAAGCACAGGCGAGCCCTTCCCATCATGCGCTCACTAGTCCCCAACAGAAGAACCACTGTCGCATCCACTGAG
Seq A exon
GTGAAAGGCACATCTCAACACAGCTGACTGATCGGACTCAG
Seq C2 exon
CAATTCCATTCTGCATCTCCTCTGGACACCCCCAGGACCACCAGGACAACCCCATCATGGCCCTGTCACCAGGCCCAGTCTCGCTCCGTGATAACCAAGATGCAGGTCCAGAGACAACCGCCCTACTTGGTTCCTGCATCTGACCCCCCTTGGTGGGTAGTGACCAGCCCAACATGGAAGAAGCCAGGGCAGCATGCAGCCAGCTGCCCTGCAGCCCCAGATGGCACCTGGGCCTTGGGAAGTCATTCTCAAAGGGGAAGCTGGAAACTTTGATGTCCCTGGAGGGAAGGGTGAACGTGGCATCCGAACAACCCTGGCAGCCAGCAGCATCTTGTCATCCAACCTGTGGGACAGAGGCCCCCTGCTGGGGAGCGAGATCCATACCTAAAGGGTCCTGGCCCAGTTGGGCCTCATCCTGGGCCCTGGGAGGGGAGGGGCACTATGGTCCCCCCAGCAGCAGTCAGCATTACCACCCAGGGGACTCAGCCTTCTGTGGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_MULTIEX1-2/9=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACCACTGTCGCATCCAC
R:
TCTCTGGACCTGCATCTTGGT
Band lengths:
139-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)