HsaEX0004363 @ hg19
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:23643]
Coordinates
chr9:38542309-38543360:-
Coord C1 exon
chr9:38543236-38543360
Coord A exon
chr9:38542974-38543052
Coord C2 exon
chr9:38542309-38542586
Length
79 bp
Sequences
Splice sites
3' ss Seq
GGCCTTGCCCTGCCCTACAGACC
3' ss Score
8.29
5' ss Seq
CATGTCATG
5' ss Score
-10.5
Exon sequences
Seq C1 exon
AGCAGGACAAACAGGCCCGGTGGTGTCAGGAGCCCAGGTCTCCAGCTGGAGGGAACGTCAACCCTGCAGTGGGAGCAGGGGCCCATCGCACATCCTAGGCACAGATGCTAATGCAGGCACTGCAG
Seq A exon
ACCATAAAGGAGAACAGCAAGAAGCCCCCAGCAAACATCCACATATGGCCCTGGACATCAGCCACATTCTGAGGAACAT
Seq C2 exon
CCTTACCCTGTAGGAATTCTAGTGACTATGTTGCCACCATCTTGGAGCTCCATGCCCTCATAGTGTAATGGCACCAGCAGATCTGCCTGTGCACAGACTTCCTGTACTACCTCACTCCTGAGGGGAGATGCTTCTGCGGGCCTGCGACCTGGTGCTCAACTTTAGACACCATCATCCTGGAGCGGCACTGCACCCTCACTAGCCAGGGTGTTGACGTCCTCAAGGCCAAGGCCACATTCAAGACTTTGGACTTCATTGATGCACTTGTGCCGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_MULTIEX1-6/9=5-7
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACATCCTAGGCACAGATG
R:
CAGAAGCATCTCCCCTCAGGA
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)