HsaEX0004364 @ hg19
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:23643]
Coordinates
chr9:38540333-38543052:-
Coord C1 exon
chr9:38542974-38543052
Coord A exon
chr9:38542309-38542586
Coord C2 exon
chr9:38540333-38540771
Length
278 bp
Sequences
Splice sites
3' ss Seq
CAGCTACTTCCTCTCCCCAGCCT
3' ss Score
6.18
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACCATAAAGGAGAACAGCAAGAAGCCCCCAGCAAACATCCACATATGGCCCTGGACATCAGCCACATTCTGAGGAACAT
Seq A exon
CCTTACCCTGTAGGAATTCTAGTGACTATGTTGCCACCATCTTGGAGCTCCATGCCCTCATAGTGTAATGGCACCAGCAGATCTGCCTGTGCACAGACTTCCTGTACTACCTCACTCCTGAGGGGAGATGCTTCTGCGGGCCTGCGACCTGGTGCTCAACTTTAGACACCATCATCCTGGAGCGGCACTGCACCCTCACTAGCCAGGGTGTTGACGTCCTCAAGGCCAAGGCCACATTCAAGACTTTGGACTTCATTGATGCACTTGTGCCGAGCAAG
Seq C2 exon
CCTTATCACATCCTGCTGGGCAAAGGCCCAACAGCCTGACTTCAGGAACATCCTTATCATCTTCTACTGAGCAGCAAGCTATACTGTCCAGAGCCCTCCCTCCCAGCGCTATGATTACCCCAGCCTGTGAGCGGCAGTGGGCACTGACACTAAGCTGGTTTCCCCCTCCGCAGGGTTTTGCTAGTAATAAACCTGTGTTGCTGTTGAAGCGGCCAGTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTTAACTCTTGCCTTGCCTTCAAATCCTTACAATAACTCCACTTCTCCATTTTACCATGGAGGATACGGGACTCAAGGAGAGCAAGTAACTTACCCAGAATTACACAGCCAGTGAGTCACAGAGTCTGAACTTGAACTCAGTTCAGCTGAATCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_MULTIEX1-7/9=6-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATATGGCCCTGGACAT
R:
ACACACACACACACACACACA
Band lengths:
293-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)