MmuEX6076841 @ mm10
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:32929470-32930662:-
Coord C1 exon
chr17:32930541-32930662
Coord A exon
chr17:32929855-32930122
Coord C2 exon
chr17:32929470-32929536
Length
268 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGGCCTGCCCTGCAGGTC
3' ss Score
11.27
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCTAAGTGGCAGTGCCTGGCCTCCAAGGGCACTTCCCGTCTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGCCTGCAGAAGTGCATCTTCAGTGTCGACAGCAACTGCCAAGA
Seq A exon
GTCTGACAGCAAATACATTGCTGCAATCCTGGAACTTAGCTCCCTTGTAGTGAAACGGCACCGCCAGCCCTTCCTGTACCTGGACCTCCTGTACTATCTCACTGCTGATGGGCGTCGCTTCCGCAAAGCCTGCGACCTGGTGCACAACTTCACAGATGCTGTCATCAAGGAGAGACGCAGCACCCTCAATACGCAGGGTGTTGAATTCCTAAAGGCCAAGGCTAAGACCAAAACTTTAGATTTTATTGATGTTCTCTTGATGGCTGAG
Seq C2 exon
GATGAACATGGTAAGGGACTATCGAATGAGGACATCCGAGCAGAGGCTGACACCTTCATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055-'14-20,'14-17,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
PF0006717=p450=FE(19.2=100)
C2:
PF0006717=p450=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCCTGGCCTCCAA
R:
TCCAAACATGAAGGTGTCAGCC
Band lengths:
180-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types