MmuEX6076841 @ mm9
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:33066415-33067607:-
Coord C1 exon
chr17:33067486-33067607
Coord A exon
chr17:33066800-33067067
Coord C2 exon
chr17:33066415-33066481
Length
268 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGGCCTGCCCTGCAGGTC
3' ss Score
11.27
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCTAAGTGGCAGTGCCTGGCCTCCAAGGGCACTTCCCGTCTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGCCTGCAGAAGTGCATCTTCAGTGTCGACAGCAACTGCCAAGA
Seq A exon
GTCTGACAGCAAATACATTGCTGCAATCCTGGAACTTAGCTCCCTTGTAGTGAAACGGCACCGCCAGCCCTTCCTGTACCTGGACCTCCTGTACTATCTCACTGCTGATGGGCGTCGCTTCCGCAAAGCCTGCGACCTGGTGCACAACTTCACAGATGCTGTCATCAAGGAGAGACGCAGCACCCTCAATACGCAGGGTGTTGAATTCCTAAAGGCCAAGGCTAAGACCAAAACTTTAGATTTTATTGATGTTCTCTTGATGGCTGAG
Seq C2 exon
GATGAACATGGTAAGGGACTATCGAATGAGGACATCCGAGCAGAGGCTGACACCTTCATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055-'12-8,'12-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100),PF056518=Diacid_rec=FE(56.3=100)
A:
PF0006717=p450=FE(27.6=100),PF056518=Diacid_rec=PD(7.0=5.6)
C2:
PF0006717=p450=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCCTGGCCTCCAA
R:
TCCAAACATGAAGGTGTCAGCC
Band lengths:
180-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: