RnoEX6030783 @ rn6
Exon Skipping
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15205384-15207820:-
Coord C1 exon
chr7:15207699-15207820
Coord A exon
chr7:15205770-15206040
Coord C2 exon
chr7:15205384-15205450
Length
271 bp
Sequences
Splice sites
3' ss Seq
CTCTCCGGCTTGCCTTACAGGTC
3' ss Score
12.5
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCGTCTGACTGCCAAGGGCAGTGCCCGTCTGGACATGTTCGAGCACATCAGCCTGATGACCTTGGACAGCCTGCAAAAATGCATCTTCAGCTTCGACAGCAACTGTCAGGA
Seq A exon
GTCTAACAGTGAATACATAGCTGCGATCCTGGAACTCAGCTCCCTCATAGTGAAACGGCAACGCCAGCCCTTCCTGTACCTGGACTTCCTGTATTACCTCACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGCGACGTGGTGCACAACTTCACAGATGCTGTCATCAGGGAGAGACGCAGCACCCTCAATACCCAGGGCGTTGATGAATTCCTAAAGGCCAGGGCTAAGACTAAAACTTTAGACTTTATTGATGTTCTCTTGCTGGCCAAG
Seq C2 exon
GATGAGCATGGGAAGGGGCTGTCGGATGTGGACATCCGAGCAGAGGCTGACACCTTCATGTTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233-'12-11,'12-10,18-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(19.4=100)
C2:
PF0006717=p450=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGGCAGCGTCTGAC
R:
CTCCGAACATGAAGGTGTCAGC
Band lengths:
188-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]