HsaEX0004376 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr2:94817173-94823074:-
Coord C1 exon
chr2:94823004-94823074
Coord A exon
chr2:94818761-94818924
Coord C2 exon
chr2:94817173-94817353
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCATCTTACTTTTATTAAAGGTC
3' ss Score
7.42
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AACAAGCCTTACCAGTGGCTTCAGAGGAAGAGCAAGAAAGGCATGAAAGAAGTGAAAAGAAGCAACCACAG
Seq A exon
GTCAAAAAAGGAAATAATACAAACAAAAGTGAAAAAATACAACTTTCAGAAAATATATGTGATAGTACATCTTCTGCTGCTGCTGGCAGATTAACCCAACAAAGAAAGATTGGGAAAACGTATCCTCAGCAATTTCCCAAGAAGCTGAAGGAAGAGCATGATAA
Seq C2 exon
ATGCACCTTAAAACAAGAAAATGAAGAAAAAACAAATGTTAATATGCTGTACAAAAAAAATAGAGAAGAATTAGAAAGGAAAGAGAAACAATATAAGAAAGAAGTTGAAGCAAAACAACTTGAACCAACTGTTCAGTCACTAGAGATGAAATCAAAGACTGCAAGAAATACTCCAAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229089_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTACCAGTGGCTTCAGAG
R:
CCGATTTGGAGTATTTCTTGCAGT
Band lengths:
247-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development