HsaEX0004401 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27318215-27322306:-
Coord C1 exon
chr10:27322154-27322306
Coord A exon
chr10:27319322-27319525
Coord C2 exon
chr10:27318215-27318285
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTATTACGTAGCCAGAGC
3' ss Score
-0.81
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTTGTTGTGAGACAACTTCAACAAGAACTAGCTGATACCCTAAAAAAACAATCTATGTCAGAGGCTTCACTGGAGGTTACGTCACGTTATCGTATTAATTTAGAAGATGAGACACAGGATTTAAAGAAGAAATTAGGTCAAATCAGAAATCAA
Seq A exon
AGCTGGGATCCGTAGATTCATACCGCTTTCCCACCCAAAGAGCTCCAGCTTTTCTCCTACACCGTACGACATAACCTTAGCCTTAAGCCCACCAGAGTGCTCGCTAAAGCAGCTCAGCATAGACAGTTGTTGCAAATGACTTGATTTGGGAACCTTGTTTCGCAGCAGAGTCCAGTGTTTTCAGTCCAGTGCTCTGATGGCCAT
Seq C2 exon
TTGCAAGAAGCACAGGATCGACATACAGAAGCTGTCAGATGTGCTGAGAAGATGCAAGATCACAAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'36-38,'36-37,37-38
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=0.000 C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGACAACTTCAACAAGAACT
R:
TTTTGCTTGTGATCTTGCATCT
Band lengths:
220-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)