HsaEX0004401 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27029286-27033377:-
Coord C1 exon
chr10:27033225-27033377
Coord A exon
chr10:27030393-27030600
Coord C2 exon
chr10:27029286-27029356
Length
208 bp
Sequences
Splice sites
3' ss Seq
TCCATTTCTTTATTACGTAGCCA
3' ss Score
6.01
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTTGTTGTGAGACAACTTCAACAAGAACTAGCTGATACCCTAAAAAAACAATCTATGTCAGAGGCTTCACTGGAGGTTACGTCACGTTATCGTATTAATTTAGAAGATGAGACACAGGATTTAAAGAAGAAATTAGGTCAAATCAGAAATCAA
Seq A exon
CCAGAGCTGGGATCCGTAGATTCATACCGCTTTCCCACCCAAAGAGCTCCAGCTTTTCTCCTACACCGTACGACATAACCTTAGCCTTAAGCCCACCAGAGTGCTCGCTAAAGCAGCTCAGCATAGACAGTTGTTGCAAATGACTTGATTTGGGAACCTTGTTTCGCAGCAGAGTCCAGTGTTTTCAGTCCAGTGCTCTGATGGCCAT
Seq C2 exon
TTGCAAGAAGCACAGGATCGACATACAGAAGCTGTCAGATGTGCTGAGAAGATGCAAGATCACAAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX4-3/10=2-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.280 C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000376087fB394
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGACAACTTCAACAAGAACT
R:
TTTTGCTTGTGATCTTGCATCT
Band lengths:
220-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development