HsaEX0004404 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27283970-27295891:-
Coord C1 exon
chr10:27295846-27295891
Coord A exon
chr10:27294552-27294652
Coord C2 exon
chr10:27283970-27284076
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTTTCATTCTAGCTG
3' ss Score
10.17
5' ss Seq
TATGTACAG
5' ss Score
-6.2
Exon sequences
Seq C1 exon
ATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTCAAAGAAG
Seq A exon
CTGCTGCTGAATTGGAATCTGGATCAATAGCTTCCCCTCTAGGGTCTACTGATGAGTCAAATCTAAATCAAGATCTAGTTTGGAAAGCATCAAGAGAATAT
Seq C2 exon
GGACCTTCTGATGAAACCCCTCATGACTATGTTCTGATGACTGACCAATGTCTCACTTCCAGGACAGACCTGCAATAGATGCCACTGGATAATGCTGAGATAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=0.588 C2=0.766
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAGGAGTTGGAAAAA
R:
TCTCAGCATTATCCAGTGGCA
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)