HsaEX0004404 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:26995041-27006962:-
Coord C1 exon
chr10:27006917-27006962
Coord A exon
chr10:27005617-27005723
Coord C2 exon
chr10:26995041-26995147
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTTTCATTCTAGCTG
3' ss Score
10.17
5' ss Seq
CAGGTTTTA
5' ss Score
0.68
Exon sequences
Seq C1 exon
ATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTCAAAGAAG
Seq A exon
CTGCTGCTGAATTGGAATCTGGATCAATAGCTTCCCCTCTAGGGTCTACTGATGAGTCAAATCTAAATCAAGATCTAGTTTGGAAAGCATCAAGAGAATATGTACAG
Seq C2 exon
GGACCTTCTGATGAAACCCCTCATGACTATGTTCTGATGACTGACCAATGTCTCACTTCCAGGACAGACCTGCAATAGATGCCACTGGATAATGCTGAGATAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=0.353 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000445828fB9369
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAGGAGTTGGAAAAA
R:
TCTCAGCATTATCCAGTGGCA
Band lengths:
146-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development