HsaEX0005881 @ hg38
Exon Skipping
Gene
ENSG00000177917 | ARL6IP6
Description
ADP ribosylation factor like GTPase 6 interacting protein 6 [Source:HGNC Symbol;Acc:HGNC:24048]
Coordinates
chr2:152718724-152720586:+
Coord C1 exon
chr2:152718724-152719496
Coord A exon
chr2:152719898-152720004
Coord C2 exon
chr2:152720533-152720586
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTCATTGCTTCCCAGCGT
3' ss Score
6.54
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
CTCGCCATCGCCTACTTGATCGTTAAAGGTATTGAAGCCGACGCCTTGAAAGTCTGTCCAGAGTAAAGTTGAGCCAGGGTGTGGCTCTCGTCTCCACCCATCTCCCTTTCCCTCGCGCTAAGCCCTCAGGCTGGCAGCTGCTTTCACCCAGAGTCCTCATTTGCATCTTACTTTGCTCTCCCGCCCTTTGCCTTTTCTAAGTGGAGCGTCCTGATCCATGATCAGGAGACGTATTTTTAAAAAGGATCGTTTGATTAAATGGGTACTCTTGAAGAAATATCTTCAAGTCCTTGAACACTGGGGATGAAATATTGTGAAGATTAAACAAAATGCGAAACACCCACCATTAAAAGGAGACAGTGAAAAGTGCATATAATTAAAATAGGCCATGTTCAATGGCCTTCATCCACAAATAAAGATGTGCTGTCCACCAATTCCTCTACACAGAATCTTGAGGGACAAAGATTTTCATCGCATAGTCCAAATTTCTTCTTTTATAG
Seq A exon
CGTTTAGTGGGCTACAGATGGCATGGCATCTAAAACCTTACAATGCTTGATTTTCATACAGAAGACACTTTGGCCAGTTGATGTGGGTTTTACCTCTTCATAAAATG
Seq C2 exon
AGTTGCATGCTGAGAATTTGAAAAATGAAGATGATGTAGACACTGGACTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177917_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0106119=ABC2_membrane=FE(16.1=100),PF150621=ARL6IP6=PU(21.5=73.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTCCTTGAACACTGGGG
R:
TTTTCAAATTCTCAGCATGCAACT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development