HsaEX0005880 @ hg38
Exon Skipping
Gene
ENSG00000177917 | ARL6IP6
Description
ADP ribosylation factor like GTPase 6 interacting protein 6 [Source:HGNC Symbol;Acc:HGNC:24048]
Coordinates
chr2:152717893-152720586:+
Coord C1 exon
chr2:152717893-152717995
Coord A exon
chr2:152718724-152719496
Coord C2 exon
chr2:152720533-152720586
Length
773 bp
Sequences
Splice sites
3' ss Seq
CGTATTCCTCCTTTACTCAGGGG
3' ss Score
7.22
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
CTGGGACCGAATGCGCGCGCGCGGTGCTCGAGGCGGAGGGGAGGAGGCGGGGAAGGCGAAAGGAGGGGTTCGGAGGAGAGGGTTCGATCTCCGTACGCACCAG
Seq A exon
GGGGACAGCTGGGGTGAAGGCGAAGTCGACGAGGAGGAGGGATGCGACCAAGTGGCCCGCGACCTGCGGGCGGAGTTCTCGGCTGGGGCGTGGTCAGAGCCCAGAAAGCGCTCGGTGCTCCCGCCGGACGGGAACGGGTCGCCCGTTCTGCCCGATAAGCGCAATGGTATCTTTCCCGCGGCCGCGGGCAGCAGAGCCCAGCCTCGGCGGTGGCCGGTCCAGGTCCTCTCTATTCTCTGCTCGCTGCTCTTCGCCATTCTTCTCGCCTTCCTCCTCGCCATCGCCTACTTGATCGTTAAAGGTATTGAAGCCGACGCCTTGAAAGTCTGTCCAGAGTAAAGTTGAGCCAGGGTGTGGCTCTCGTCTCCACCCATCTCCCTTTCCCTCGCGCTAAGCCCTCAGGCTGGCAGCTGCTTTCACCCAGAGTCCTCATTTGCATCTTACTTTGCTCTCCCGCCCTTTGCCTTTTCTAAGTGGAGCGTCCTGATCCATGATCAGGAGACGTATTTTTAAAAAGGATCGTTTGATTAAATGGGTACTCTTGAAGAAATATCTTCAAGTCCTTGAACACTGGGGATGAAATATTGTGAAGATTAAACAAAATGCGAAACACCCACCATTAAAAGGAGACAGTGAAAAGTGCATATAATTAAAATAGGCCATGTTCAATGGCCTTCATCCACAAATAAAGATGTGCTGTCCACCAATTCCTCTACACAGAATCTTGAGGGACAAAGATTTTCATCGCATAGTCCAAATTTCTTCTTTTATAG
Seq C2 exon
AGTTGCATGCTGAGAATTTGAAAAATGAAGATGATGTAGACACTGGACTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177917_MULTIEX1-1/6=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0106119=ABC2_membrane=FE(16.1=100),PF150621=ARL6IP6=PU(21.5=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development