BtaEX0004346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001435 | ARL6IP6
Description
Bos taurus ADP-ribosylation-like factor 6 interacting protein 6 (ARL6IP6), mRNA. [Source:RefSeq mRNA;Acc:NM_001034281]
Coordinates
chr2:43582328-43599936:-
Coord C1 exon
chr2:43584972-43599936
Coord A exon
chr2:43583822-43584126
Coord C2 exon
chr2:43582328-43582381
Length
305 bp
Sequences
Splice sites
3' ss Seq
CCTGCGTATTCCGTTTTCAGTCA
3' ss Score
9.01
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CATTTCACTCACCATGAGGCCTCCACGCTCGGCTCCCGTCCCCGGCCTCATCGTCGGGCTCAGACTGCTCCGCCGGCGGCCACTGCCGCTACACATACCAACAAAAAGCGATCTGAGTGGCTGGCGCCCACTGGGGCCAAAGGTTAAAGGCTGCCCTGCGCTATGGGGCGGGATCAGCGGGGCCAGTAGGCTGACAGGCTTCCCTGCTGTCCAATCAGACTGCGTTTCCGACTCTCAGCTCTTCGGCGATTCGCCCCCAGCCTCAGCCTAACTCAGCGTCGACAGTATGGAGTTGGGGGAGGGGGACGGAAGAAGTTTCTGCGCGGATTCCCCGCAGGGAAGACTCCAACTTTCCCCGGGGAAGGGAAGACAACGGTGTCCCAGCTTCTCGAACTTAGACTGCCACACCCCGTAGGGAGTGGACCAGTGGAGGCCTGCCACCTTCAACCTCTGCCCCCCTTCCGAATCACCTATGCCCCACAAACCTGAGGCCGCCAGAG
Seq A exon
TCAGGGAGATAGCTGGGGTGAGGGCGAAGTCGAAGAGGAGGAGGGATGCGACCAAGTGGCCCGTGATTTGCGGGCGGAGTTCTCGGCCGGGTCGTCATCGAAACTCAGAAAGGACCCGGTACTCCAGCCAGATGGGGACGGATCTCCGGTTCTGCCCGATAAACGCAATGGCATTTTCTCGGCGGATGCGGGTGGTAAAGCCCTGGCTCGGCGCTGGCCGGTCCAAGTCCTCTCAATTCTCTGTTCTCTGCTGTTCGCCATCCTTCTTGCCTGCCTGCTCGCCATCACCTACCTGATCGTAAAAG
Seq C2 exon
AGTTACATGCTGAAAATTTGAAGAATGAAGATGATGTAAACACTGGACTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001435_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.209 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF150621=ARL6IP6=PU(18.2=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATCAGACTGCGTTTCCG
R:
ACAGTCCAGTGTTTACATCATCT
Band lengths:
342-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development