HsaEX0005880 @ hg19
Exon Skipping
Gene
ENSG00000177917 | ARL6IP6
Description
ADP-ribosylation-like factor 6 interacting protein 6 [Source:HGNC Symbol;Acc:24048]
Coordinates
chr2:153574407-153577100:+
Coord C1 exon
chr2:153574407-153574509
Coord A exon
chr2:153575238-153575538
Coord C2 exon
chr2:153577047-153577100
Length
301 bp
Sequences
Splice sites
3' ss Seq
CGTATTCCTCCTTTACTCAGGGG
3' ss Score
7.22
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
CTGGGACCGAATGCGCGCGCGCGGTGCTCGAGGCGGAGGGGAGGAGGCGGGGAAGGCGAAAGGAGGGGTTCGGAGGAGAGGGTTCGATCTCCGTACGCACCAG
Seq A exon
GGGGACAGCTGGGGTGAAGGCGAAGTCGACGAGGAGGAGGGATGCGACCAAGTGGCCCGCGACCTGCGGGCGGAGTTCTCGGCTGGGGCGTGGTCAGAGCCCAGAAAGCGCTCGGTGCTCCCGCCGGACGGGAACGGGTCGCCCGTTCTGCCCGATAAGCGCAATGGTATCTTTCCCGCGGCCGCGGGCAGCAGAGCCCAGCCTCGGCGGTGGCCGGTCCAGGTCCTCTCTATTCTCTGCTCGCTGCTCTTCGCCATTCTTCTCGCCTTCCTCCTCGCCATCGCCTACTTGATCGTTAAAG
Seq C2 exon
AGTTGCATGCTGAGAATTTGAAAAATGAAGATGATGTAGACACTGGACTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177917_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.322 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0106119=ABC2_membrane=PU(39.4=29.1),PF065706=DUF1129=PU(47.8=32.1)
C2:
PF0106119=ABC2_membrane=FE(18.2=100),PF065706=DUF1129=FE(20.0=100),PF150621=ARL6IP6=PU(21.2=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)